Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_L21
(599 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U42439-8|AAM98032.1| 431|Caenorhabditis elegans Hypothetical pr... 30 1.5
AF003139-6|AAB54156.1| 327|Caenorhabditis elegans Collagen prot... 28 4.4
AC024201-7|AAF36018.2| 321|Caenorhabditis elegans Hypothetical ... 28 4.4
Z82286-6|CAB05304.1| 376|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z81134-7|CAD56602.1| 879|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z81134-6|CAB03450.2| 795|Caenorhabditis elegans Hypothetical pr... 28 5.9
AY494975-1|AAR87492.1| 486|Caenorhabditis elegans collagen/olfa... 28 5.9
AL117202-32|CAD56611.1| 879|Caenorhabditis elegans Hypothetical... 28 5.9
AL117202-31|CAD56610.1| 795|Caenorhabditis elegans Hypothetical... 28 5.9
AF240777-1|AAF63745.1| 376|Caenorhabditis elegans delta 12 fatt... 28 5.9
AF125448-4|AAN63406.1| 453|Caenorhabditis elegans Hypothetical ... 28 5.9
AF125448-3|AAD12809.1| 575|Caenorhabditis elegans Hypothetical ... 28 5.9
AF125448-2|AAL32228.1| 582|Caenorhabditis elegans Hypothetical ... 28 5.9
AF125448-1|AAD12814.1| 578|Caenorhabditis elegans Hypothetical ... 28 5.9
AF000262-4|AAN60526.2| 486|Caenorhabditis elegans Colmedin (col... 28 5.9
>U42439-8|AAM98032.1| 431|Caenorhabditis elegans Hypothetical
protein F19C7.8a protein.
Length = 431
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = -1
Query: 134 HRHSPPIPIGPKYRRGPVGLSQGRCGAMLTQSRIVPIPNAAGG 6
H +SPP+ G Y GLS + + L Q R++P P +GG
Sbjct: 92 HYYSPPVYPGSHYH----GLSTSQHSSPLYQRRMLPTPKNSGG 130
>AF003139-6|AAB54156.1| 327|Caenorhabditis elegans Collagen protein
45 protein.
Length = 327
Score = 28.3 bits (60), Expect = 4.4
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +2
Query: 158 THLFAQYSTMRASSGRREVATELQWVKGCGGMSPH-ECETRP 280
T LF QY R+S RR+ E G GG +PH EC P
Sbjct: 93 TWLFGQYIPDRSSRNRRQQYAE---AAGGGGGAPHAECRRGP 131
>AC024201-7|AAF36018.2| 321|Caenorhabditis elegans Hypothetical
protein Y71F9B.2 protein.
Length = 321
Score = 28.3 bits (60), Expect = 4.4
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -1
Query: 509 KSDIKSYR-VYITGRRGCPILFYAKPKHVNCDV 414
K D+ +R +YI+GR P+L KP+ CD+
Sbjct: 109 KQDLLDWRWIYISGRLHKPVLEVIKPRQDMCDL 141
>Z82286-6|CAB05304.1| 376|Caenorhabditis elegans Hypothetical
protein W02A2.1 protein.
Length = 376
Score = 27.9 bits (59), Expect = 5.9
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = -1
Query: 443 AKPKH--VNCDVTRVLHYKSNYFYLLGLYFGFPYRPHH 336
A P+H V +T + + +Y L GLYF PY H+
Sbjct: 31 AIPEHCFVKDPLTSISYLIKDYVLLAGLYFAVPYIEHY 68
>Z81134-7|CAD56602.1| 879|Caenorhabditis elegans Hypothetical
protein T28D6.5b protein.
Length = 879
Score = 27.9 bits (59), Expect = 5.9
Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 4/59 (6%)
Frame = +1
Query: 10 PAAFGMGTIRDCVSIAPHRPCDKPTG----PRLYLGPMGMGGECRCLTHWLSPHPPLRP 174
P A G ++ PH P P PR L EC C+ + SPH P+RP
Sbjct: 50 PDAEPYGIVQPAYPYDPH-PLSVPESLVQSPRAILCNNQTEYECVCMRPYSSPHSPVRP 107
>Z81134-6|CAB03450.2| 795|Caenorhabditis elegans Hypothetical
protein T28D6.5a protein.
Length = 795
Score = 27.9 bits (59), Expect = 5.9
Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 4/59 (6%)
Frame = +1
Query: 10 PAAFGMGTIRDCVSIAPHRPCDKPTG----PRLYLGPMGMGGECRCLTHWLSPHPPLRP 174
P A G ++ PH P P PR L EC C+ + SPH P+RP
Sbjct: 50 PDAEPYGIVQPAYPYDPH-PLSVPESLVQSPRAILCNNQTEYECVCMRPYSSPHSPVRP 107
>AY494975-1|AAR87492.1| 486|Caenorhabditis elegans
collagen/olfactomedin domain containingprotein 2
protein.
Length = 486
Score = 27.9 bits (59), Expect = 5.9
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -1
Query: 152 ESQWVRHRHSPPIPIGPKYRRGPVGLSQGRCGAM 51
E VR + P P+GP + GP G QGR G M
Sbjct: 86 EQDDVRGKPGPVGPVGPPGKSGPAG-PQGRRGLM 118
>AL117202-32|CAD56611.1| 879|Caenorhabditis elegans Hypothetical
protein T28D6.5b protein.
Length = 879
Score = 27.9 bits (59), Expect = 5.9
Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 4/59 (6%)
Frame = +1
Query: 10 PAAFGMGTIRDCVSIAPHRPCDKPTG----PRLYLGPMGMGGECRCLTHWLSPHPPLRP 174
P A G ++ PH P P PR L EC C+ + SPH P+RP
Sbjct: 50 PDAEPYGIVQPAYPYDPH-PLSVPESLVQSPRAILCNNQTEYECVCMRPYSSPHSPVRP 107
>AL117202-31|CAD56610.1| 795|Caenorhabditis elegans Hypothetical
protein T28D6.5a protein.
Length = 795
Score = 27.9 bits (59), Expect = 5.9
Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 4/59 (6%)
Frame = +1
Query: 10 PAAFGMGTIRDCVSIAPHRPCDKPTG----PRLYLGPMGMGGECRCLTHWLSPHPPLRP 174
P A G ++ PH P P PR L EC C+ + SPH P+RP
Sbjct: 50 PDAEPYGIVQPAYPYDPH-PLSVPESLVQSPRAILCNNQTEYECVCMRPYSSPHSPVRP 107
>AF240777-1|AAF63745.1| 376|Caenorhabditis elegans delta 12 fatty
acid desaturaseFAT-2 protein.
Length = 376
Score = 27.9 bits (59), Expect = 5.9
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = -1
Query: 443 AKPKH--VNCDVTRVLHYKSNYFYLLGLYFGFPYRPHH 336
A P+H V +T + + +Y L GLYF PY H+
Sbjct: 31 AIPEHCFVKDPLTSISYLIKDYVLLAGLYFAVPYIEHY 68
>AF125448-4|AAN63406.1| 453|Caenorhabditis elegans Hypothetical
protein H14E04.2d protein.
Length = 453
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/49 (26%), Positives = 19/49 (38%)
Frame = +1
Query: 1 PEPPAAFGMGTIRDCVSIAPHRPCDKPTGPRLYLGPMGMGGECRCLTHW 147
P M + V + PH D TGP ++LG +G + W
Sbjct: 320 PTSTDVLAMTVSKGNVVVMPHPNADTKTGPEIHLGTVGAMSAMKKYEKW 368
>AF125448-3|AAD12809.1| 575|Caenorhabditis elegans Hypothetical
protein H14E04.2a protein.
Length = 575
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/49 (26%), Positives = 19/49 (38%)
Frame = +1
Query: 1 PEPPAAFGMGTIRDCVSIAPHRPCDKPTGPRLYLGPMGMGGECRCLTHW 147
P M + V + PH D TGP ++LG +G + W
Sbjct: 442 PTSTDVLAMTVSKGNVVVMPHPNADTKTGPEIHLGTVGAMSAMKKYEKW 490
>AF125448-2|AAL32228.1| 582|Caenorhabditis elegans Hypothetical
protein H14E04.2c protein.
Length = 582
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/49 (26%), Positives = 19/49 (38%)
Frame = +1
Query: 1 PEPPAAFGMGTIRDCVSIAPHRPCDKPTGPRLYLGPMGMGGECRCLTHW 147
P M + V + PH D TGP ++LG +G + W
Sbjct: 449 PTSTDVLAMTVSKGNVVVMPHPNADTKTGPEIHLGTVGAMSAMKKYEKW 497
>AF125448-1|AAD12814.1| 578|Caenorhabditis elegans Hypothetical
protein H14E04.2b protein.
Length = 578
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/49 (26%), Positives = 19/49 (38%)
Frame = +1
Query: 1 PEPPAAFGMGTIRDCVSIAPHRPCDKPTGPRLYLGPMGMGGECRCLTHW 147
P M + V + PH D TGP ++LG +G + W
Sbjct: 445 PTSTDVLAMTVSKGNVVVMPHPNADTKTGPEIHLGTVGAMSAMKKYEKW 493
>AF000262-4|AAN60526.2| 486|Caenorhabditis elegans Colmedin
(collagen plus olfactomedin)family protein 2 protein.
Length = 486
Score = 27.9 bits (59), Expect = 5.9
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -1
Query: 152 ESQWVRHRHSPPIPIGPKYRRGPVGLSQGRCGAM 51
E VR + P P+GP + GP G QGR G M
Sbjct: 86 EQDDVRGKPGPVGPVGPPGKSGPAG-PQGRRGLM 118
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,263,996
Number of Sequences: 27780
Number of extensions: 358196
Number of successful extensions: 875
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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