Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_L21
         (599 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g38900.2 68417.m05511 bZIP protein vsf-1 protein, Lycopersico...    30   1.0  
At4g38900.1 68417.m05510 bZIP protein vsf-1 protein, Lycopersico...    30   1.0  
At4g36050.2 68417.m05132 endonuclease/exonuclease/phosphatase fa...    28   4.1  
At4g36050.1 68417.m05131 endonuclease/exonuclease/phosphatase fa...    28   4.1  
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c...    27   7.2  
At1g79480.1 68414.m09263 hypothetical protein low similarity to ...    27   9.5  

>At4g38900.2 68417.m05511 bZIP protein vsf-1 protein, Lycopersicon
           esculentum, PIR2:S52203
          Length = 547

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 21/52 (40%), Positives = 26/52 (50%)
 Frame = -3

Query: 357 IPVSSPSQMRRTAPGALVVTSGRFTSGRVSHSCGDIPPHPFTHCNSVATSLL 202
           +P  SPS  R          SG F S   +HS   +PP PFT CNS ++S L
Sbjct: 112 LPPLSPSPFRDHDVSMEDRDSGVFNS---NHS---LPPSPFTRCNSTSSSSL 157


>At4g38900.1 68417.m05510 bZIP protein vsf-1 protein, Lycopersicon
           esculentum, PIR2:S52203
          Length = 553

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 21/52 (40%), Positives = 26/52 (50%)
 Frame = -3

Query: 357 IPVSSPSQMRRTAPGALVVTSGRFTSGRVSHSCGDIPPHPFTHCNSVATSLL 202
           +P  SPS  R          SG F S   +HS   +PP PFT CNS ++S L
Sbjct: 112 LPPLSPSPFRDHDVSMEDRDSGVFNS---NHS---LPPSPFTRCNSTSSSSL 157


>At4g36050.2 68417.m05132 endonuclease/exonuclease/phosphatase
           family protein
          Length = 609

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -3

Query: 312 ALVVTSGRFTSGRVSHSCGDIPPHPFTHCNSVATSL 205
           A+ V+    T    S  CGDI   P  +C S+  SL
Sbjct: 375 AIEVSCSSSTQSNTSSICGDISTGPLRNCGSMGISL 410


>At4g36050.1 68417.m05131 endonuclease/exonuclease/phosphatase
           family protein
          Length = 408

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -3

Query: 312 ALVVTSGRFTSGRVSHSCGDIPPHPFTHCNSVATSL 205
           A+ V+    T    S  CGDI   P  +C S+  SL
Sbjct: 174 AIEVSCSSSTQSNTSSICGDISTGPLRNCGSMGISL 209


>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
           contains Pfam profile: PF00270 DEAD/DEAH box helicase
          Length = 505

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
 Frame = -2

Query: 265 LVRRHPSAPLYPL*-LCCHLSPPGRSSHXXXXXXXXXXXRASGSGIGILPP 116
           L+RR  SA ++P    C ++  PG SSH              G G  + PP
Sbjct: 58  LLRRVDSARVFPATDECFYVRDPGSSSHDAQLLRRKLDIHVQGQGSAVPPP 108


>At1g79480.1 68414.m09263 hypothetical protein low similarity to
           beta-1,3-glucanase-like protein GI:9758115 from
           [Arabidopsis thaliana]
          Length = 356

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 19  FGMGTIRDCVSIAPHRPCDKP 81
           F  G+  DC SI P+ PC KP
Sbjct: 285 FACGSGADCHSIQPNGPCFKP 305


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,558,032
Number of Sequences: 28952
Number of extensions: 336723
Number of successful extensions: 814
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 814
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)