Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_L20
         (483 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    27   1.5  
SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr 3||...    27   2.0  
SPCC777.14 |prp4||serine/threonine protein kinase Prp4|Schizosac...    26   2.6  
SPCC132.02 |hst2||Sir2 family histone deacetylase Hst2|Schizosac...    25   4.5  
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    25   4.5  
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce...    25   4.5  
SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosacchar...    25   7.9  
SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr 2|...    25   7.9  
SPAC1952.17c ||SPAC890.01c|GTPase activating protein|Schizosacch...    25   7.9  

>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
           protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1385

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = -2

Query: 449 RSNASFRTTKDTSPTEGNLLSGSVLSNVFKLSFEG 345
           R N   R  K  SP       G + SNV+K+SF G
Sbjct: 795 RYNNQTRKVKVESPLSNANELGELFSNVYKISFSG 829


>SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 465

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 394 CCRDQFFRTFLNFPSKVFLFLLYEGLYTIR 305
           CC D  F   L+F   +F+FL  EG+  +R
Sbjct: 284 CCLDPHF-LHLSFSGVLFIFLFVEGIRILR 312


>SPCC777.14 |prp4||serine/threonine protein kinase
           Prp4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 477

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 12/57 (21%), Positives = 26/57 (45%)
 Frame = +1

Query: 277 HEDSSLQYLDESYISLHKEEIRRPSKESLKTFERTDPDNRLPSVGEVSFVVRNEAFE 447
           H D+   ++   +  +  +E R+P K S  T +       +P+  +  F++R E  +
Sbjct: 393 HFDADFNFIQIDHDPITNQETRKPVKFSKPTKDIRSRLKEVPTSTDEEFIIRQELMD 449


>SPCC132.02 |hst2||Sir2 family histone deacetylase
           Hst2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 332

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
 Frame = +2

Query: 374 KELIPTTGYLQLGRCLSLYEMKRSS-VAVCV 463
           K LI   G  Q  RC+  YEM  +  V  C+
Sbjct: 132 KALIEAHGSFQYSRCIECYEMAETEYVRACI 162


>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +1

Query: 25  VTEPPDWGPKLVSDRSWYGVGSTLRATCASPLSYPPANLTFAL 153
           + E P W  +       Y   ST  A+  +P S PPA+  F++
Sbjct: 315 LNENPIWSKRFSISSIKYSAPSTSNASNIAPDSAPPASSQFSV 357


>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1151

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 125 YESGEAQVARSVEPTPYHDLSDTSF 51
           Y +    + R+V PTP H +SD +F
Sbjct: 112 YINPSLHLNRTVFPTPQHSISDANF 136


>SPAC13F5.06c |sec10||exocyst complex subunit
           Sec10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 8/42 (19%), Positives = 22/42 (52%)
 Frame = +1

Query: 247 DVPDNDLNFFHEDSSLQYLDESYISLHKEEIRRPSKESLKTF 372
           D+PD+       +   ++L+ +++     E R+P+ + + +F
Sbjct: 190 DLPDSSETLARIEKFSEFLETNFLKFFNNEYRKPNWKGMASF 231


>SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 342

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
 Frame = +1

Query: 52  KLVSDRSWYGVGSTLRATCA---SPLSYPPANLTFALNGLEIDMGPMIHELPLWFKWDPL 222
           K V+  +W  +  + R+      SP +   A   FAL   EI++      LP+W +   +
Sbjct: 176 KNVTKVAWTYINDSTRSIACLLYSPKTIAAAAFQFALEKNEINLSTTTDGLPVWMEESQV 235

Query: 223 S 225
           S
Sbjct: 236 S 236


>SPAC1952.17c ||SPAC890.01c|GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 619

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = +1

Query: 256 DNDLNFFHEDSSLQYLDESYISLHKEEIRRPSKESLKTFERTDPDNRLPSVGEVS 420
           D+ LN   +    +Y D++ I    ++  R +   L  F+     N+ PSV  VS
Sbjct: 95  DHPLNTSDDSKWKEYFDDNQILEQIDKDIRRTLPDLSFFQGKSEINKKPSVNNVS 149


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.135    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,142,672
Number of Sequences: 5004
Number of extensions: 44790
Number of successful extensions: 114
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)