Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_L20
         (483 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0156 + 23160681-23160862,23161090-23161179,23163145-231634...    31   0.64 
02_03_0168 + 15932050-15932805                                         30   0.85 
09_02_0152 + 5040845-5041001,5042645-5042757,5043556-5043816,504...    29   2.0  
12_02_0414 + 18824347-18825161,18826018-18828229                       29   2.6  
04_01_0179 + 2021977-2024890,2025117-2025610                           28   4.5  
08_02_1329 - 26182762-26183007,26183149-26183249,26183533-261836...    27   6.0  
12_01_0808 + 7418878-7420476                                           27   7.9  

>04_04_0156 +
           23160681-23160862,23161090-23161179,23163145-23163433,
           23164574-23164669,23164755-23165123
          Length = 341

 Score = 30.7 bits (66), Expect = 0.64
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
 Frame = +1

Query: 31  EPPDWGPKLVSDRSWYGVGSTLRATCASPLSYPPA----NLTFALNGLEIDMGPM 183
           +PP +  +  S RS+ G G  L    A     PP     N+ F  NG  +D GP+
Sbjct: 120 QPPPFEDQSSSSRSFTGTGRLLSGETAPAAPPPPGNVLHNIQFWNNGFTVDDGPL 174


>02_03_0168 + 15932050-15932805
          Length = 251

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 17/63 (26%), Positives = 28/63 (44%)
 Frame = +1

Query: 244 TDVPDNDLNFFHEDSSLQYLDESYISLHKEEIRRPSKESLKTFERTDPDNRLPSVGEVSF 423
           T++P+N     HE+ S   L+    SL  E + +     ++  E  D D       EV+ 
Sbjct: 85  TEIPNNTSEIVHEEGSHAILEVKPHSLPAEIVSQHDDMQMEQKENNDYDTGTTEASEVAN 144

Query: 424 VVR 432
           V+R
Sbjct: 145 VIR 147


>09_02_0152 +
           5040845-5041001,5042645-5042757,5043556-5043816,
           5043954-5044058,5044726-5044791,5044882-5044999,
           5045018-5045103,5045900-5046424,5046534-5047115,
           5047203-5047385,5049326-5049392,5049685-5049791,
           5049977-5050076,5050228-5050313,5050394-5050485,
           5050591-5050705,5050792-5050983
          Length = 984

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -2

Query: 437 SFRTTKDTSPTEGNLLSGSVLSNV-FKLSFEGLL 339
           +F   +D++PT GN L GS+ SN+   L  +G+L
Sbjct: 532 AFAGLQDSAPTTGNSLKGSLTSNILMNLQNKGVL 565


>12_02_0414 + 18824347-18825161,18826018-18828229
          Length = 1008

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = -2

Query: 230 IFESGSHLNHNGNSCIIGPISISRPLSAKVRLAGGYESGEAQVARSVE 87
           + ++G HL        +GP  ++     K   AGG  S +A++A  VE
Sbjct: 530 LIQNGEHLQTTSGDNNLGPRRLAIVYDPKANRAGGGNSNKAKLAEMVE 577


>04_01_0179 + 2021977-2024890,2025117-2025610
          Length = 1135

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
 Frame = +1

Query: 4   LTNFI-TIVTEPPDWGPKLVSDRSWYGVGSTLRATCASPLSYPPANLTFAL 153
           LT ++ T    PPDW P   S   W  VG        + +++   +L   L
Sbjct: 28  LTQWLNTTAARPPDWSPSASSPCKWSHVGCDAATGSVTSVTFQSVHLAAPL 78


>08_02_1329 -
           26182762-26183007,26183149-26183249,26183533-26183602,
           26183692-26183895,26186435-26186941,26188672-26188677
          Length = 377

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
 Frame = -2

Query: 140 RLAGGYESGEAQVARSVE----PTPYHDLSDTSFGPQSGGSV 27
           R  GG  SG    + SVE    P+P H  SD+  G   GG V
Sbjct: 112 RRGGGRTSGGGGSSYSVEHSPSPSPLHPYSDSGSGSYGGGLV 153


>12_01_0808 + 7418878-7420476
          Length = 532

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -3

Query: 307 RPDIVGYYLRGRNLNRYQERQLWSFLFLK 221
           R  +VG  L G+NL+ Y   +L S LFL+
Sbjct: 77  RRRVVGVALAGKNLSGYIPSELGSLLFLR 105


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.317    0.135    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,870,689
Number of Sequences: 37544
Number of extensions: 288838
Number of successful extensions: 738
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)