Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_L20
         (483 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24828| Best HMM Match : Peptidase_A17 (HMM E-Value=1.7e-23)         28   3.5  
SB_57137| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.6  
SB_11312| Best HMM Match : Ank (HMM E-Value=2.1e-18)                   27   8.1  
SB_46975| Best HMM Match : PSCyt1 (HMM E-Value=7.8)                    27   8.1  
SB_15059| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.1  
SB_14336| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.22)              27   8.1  

>SB_24828| Best HMM Match : Peptidase_A17 (HMM E-Value=1.7e-23)
          Length = 1531

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 18/64 (28%), Positives = 31/64 (48%)
 Frame = +1

Query: 46  GPKLVSDRSWYGVGSTLRATCASPLSYPPANLTFALNGLEIDMGPMIHELPLWFKWDPLS 225
           G  L +  S  G+  T+  T +SP +    N+  AL G+   +   IH+LP+ +K +  +
Sbjct: 54  GTTLKATFSMSGIRGTVTFTQSSPNT--STNIKLALTGVNETLSWQIHDLPVIYKGNAAT 111

Query: 226 KIET 237
              T
Sbjct: 112 TCNT 115


>SB_57137| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 530

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = +1

Query: 109 ASPLSYPPANLTFALNGLEIDMGPMIHELPLWFKWDPLSKIETTTTDVPDNDLNFFHEDS 288
           +SP S+ PA  ++  + L +D+G + H   +    D      T T  +  +D N FH +S
Sbjct: 59  SSPTSWQPAQQSYDRDYLLVDLGVVHHLCSIATAGDERGGRWTRTYKIALSDDNIFHGNS 118


>SB_11312| Best HMM Match : Ank (HMM E-Value=2.1e-18)
          Length = 516

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = -2

Query: 164 SRPLSAKVRLAGGYESGEAQVARSVEPTPYHDLSDTSFGPQSGG 33
           SR     VR+ GG +S + Q   S  PT   D   T+F P + G
Sbjct: 426 SRHREECVRVTGGTKSNDRQRTESPTPTTDPDAPLTTFPPTTQG 469


>SB_46975| Best HMM Match : PSCyt1 (HMM E-Value=7.8)
          Length = 363

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = +1

Query: 256 DNDLNFFHEDSSLQYLDESYISLHKEEIRRPS 351
           D  LNF   +SSL YLD   +  H+EE R  S
Sbjct: 72  DMKLNF-SSNSSLSYLDRLVLKKHREEGRTAS 102


>SB_15059| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 947

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
 Frame = -2

Query: 227 FESGSHLNHNGNS-CIIGPISISRPLSAKVRLAGGYESGEAQVARSVEPTPYHDL--SDT 57
           + +G+ +   G++ C    +S   P++    +    E+  AQ  +  EPT YH +  S  
Sbjct: 261 WRTGAKITRAGSTMCGTDSVSSGSPITTIYAVENRCENYSAQARQCAEPTRYHPVLQSQL 320

Query: 56  SFGPQSGGSVT 24
           S   ++G  +T
Sbjct: 321 SMPWRTGAKIT 331


>SB_14336| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.22)
          Length = 774

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = -3

Query: 355 PSKVFLFLLYEGLYTIRPDIVGYYLRGRNLNRYQE 251
           PSK F++L    LY    D   Y L  RNL  Y E
Sbjct: 328 PSKYFMYLDANNLYGWAMDKEKYVLHYRNLQLYTE 362


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.317    0.135    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,975,829
Number of Sequences: 59808
Number of extensions: 322912
Number of successful extensions: 1024
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1024
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1013948003
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)