Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_L20
         (483 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing ...    30   0.94 
At3g14460.1 68416.m01832 disease resistance protein (NBS-LRR cla...    29   1.2  
At2g02910.1 68415.m00240 expressed protein contains Pfam profile...    28   2.9  
At5g57035.1 68418.m07119 protein kinase family protein contains ...    28   3.8  
At5g08630.1 68418.m01026 DDT domain-containing protein low simil...    28   3.8  
At3g60830.1 68416.m06805 actin-related protein 7 (ARP7) identica...    28   3.8  
At3g21500.2 68416.m02713 1-deoxy-D-xylulose 5-phosphate synthase...    28   3.8  
At3g21500.1 68416.m02712 1-deoxy-D-xylulose 5-phosphate synthase...    28   3.8  
At3g16490.1 68416.m02105 calmodulin-binding family protein conta...    27   5.0  
At3g13000.2 68416.m01620 expressed protein contains Pfam profile...    27   6.6  
At3g13000.1 68416.m01619 expressed protein contains Pfam profile...    27   6.6  
At5g43000.1 68418.m05244 hypothetical protein                          27   8.8  
At3g04240.1 68416.m00448 O-linked N-acetyl glucosamine transfera...    27   8.8  

>At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing
           protein 
          Length = 987

 Score = 29.9 bits (64), Expect = 0.94
 Identities = 19/48 (39%), Positives = 23/48 (47%)
 Frame = +1

Query: 256 DNDLNFFHEDSSLQYLDESYISLHKEEIRRPSKESLKTFERTDPDNRL 399
           DNDLN  H     + LDE Y    KE   R    SL+T  R+   N+L
Sbjct: 733 DNDLNSRHSKRRSKSLDEDYDM--KERRGRSRSRSLETKNRSSRKNKL 778


>At3g14460.1 68416.m01832 disease resistance protein (NBS-LRR
           class), putative domain signature NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1424

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 15/53 (28%), Positives = 28/53 (52%)
 Frame = +1

Query: 49  PKLVSDRSWYGVGSTLRATCASPLSYPPANLTFALNGLEIDMGPMIHELPLWF 207
           PK + D S++G+ S   ++C   +S PP     +L  L I+   ++ ++ L F
Sbjct: 775 PKWLGDSSFFGITSVTLSSCNLCISLPPVGQLPSLKYLSIEKFNILQKVGLDF 827


>At2g02910.1 68415.m00240 expressed protein contains Pfam profile:
           PF04765 protein of unknown function (DUF616)
          Length = 460

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 14/27 (51%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
 Frame = +1

Query: 355 ESLKTFERTDPDNRLPS-VGEVSFVVR 432
           + LK F+ +DP++ LPS V E SF+VR
Sbjct: 360 DGLKKFDPSDPNSPLPSYVPEGSFIVR 386


>At5g57035.1 68418.m07119 protein kinase family protein contains
           Pfam profile: PF00069 Eukaryotic protein kinase domain
          Length = 786

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 10/39 (25%), Positives = 25/39 (64%)
 Frame = +1

Query: 292 LQYLDESYISLHKEEIRRPSKESLKTFERTDPDNRLPSV 408
           ++ LDES +S++K ++R+  ++    F+R    N++ ++
Sbjct: 75  IEELDESVVSMYKRDLRKEFEQVFVPFKRICKSNKVETL 113


>At5g08630.1 68418.m01026 DDT domain-containing protein low
           similarity to SP|Q9NRL2 Bromodomain adjacent to zinc
           finger domain protein 1A (ATP-utilizing chromatin
           assembly and remodeling factor 1) (ATP-dependent
           chromatin remodelling protein) (Williams syndrome
           transcription factor-related chromatin remodeling factor
           180) {Homo sapiens}; contains Pfam profile PF02791: DDT
           domain
          Length = 723

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +1

Query: 304 DESYISLHKEEIRRPSKESLKTFERTDPDNR 396
           +E   S+ K+E++  S++   TFER  P+ R
Sbjct: 560 EEKGFSVKKQEVKSASEDEKGTFERRGPEQR 590


>At3g60830.1 68416.m06805 actin-related protein 7 (ARP7) identical
           to actin-related protein 7 (ARP7) [Arabidopsis thaliana]
           GI:21427469; contains Pfam profile PF00022: Actin
          Length = 363

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 15/60 (25%), Positives = 29/60 (48%)
 Frame = +1

Query: 286 SSLQYLDESYISLHKEEIRRPSKESLKTFERTDPDNRLPSVGEVSFVVRNEAFERGSLRL 465
           S ++ L E Y +  ++EI     ++ +  + T PD ++ S+G   + V    F+   L L
Sbjct: 193 SDVEKLKEQYANCAEDEIAYKKTQNCEIEQHTLPDGQVISIGRERYSVGEALFQPSILGL 252


>At3g21500.2 68416.m02713 1-deoxy-D-xylulose 5-phosphate synthase,
           putative / 1-deoxyxylulose-5-phosphate synthase,
           putative / DXP-synthase, putative strong similarity to
           1-D-deoxyxylulose 5-phosphate synthase [Lycopersicon
           esculentum] GI:5059160, DEF (deficient in
           photosynthesis) protein [Arabidopsis thaliana]
           GI:1399261; ; contains Pfam profiles PF02779:
           Transketolase, pyridine binding domain, PF02780:
           Transketolase, C-terminal domain
          Length = 629

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 19/58 (32%), Positives = 28/58 (48%)
 Frame = -2

Query: 242 VVVSIFESGSHLNHNGNSCIIGPISISRPLSAKVRLAGGYESGEAQVARSVEPTPYHD 69
           + +S+F   S++N N +   + P S+S    +KVR     E GE    R   PTP  D
Sbjct: 1   MALSVFAFPSYINRNPSLKYLKPSSMSSTKYSKVRATTFSEKGEYYSNR--PPTPLLD 56


>At3g21500.1 68416.m02712 1-deoxy-D-xylulose 5-phosphate synthase,
           putative / 1-deoxyxylulose-5-phosphate synthase,
           putative / DXP-synthase, putative strong similarity to
           1-D-deoxyxylulose 5-phosphate synthase [Lycopersicon
           esculentum] GI:5059160, DEF (deficient in
           photosynthesis) protein [Arabidopsis thaliana]
           GI:1399261; ; contains Pfam profiles PF02779:
           Transketolase, pyridine binding domain, PF02780:
           Transketolase, C-terminal domain
          Length = 628

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 19/58 (32%), Positives = 28/58 (48%)
 Frame = -2

Query: 242 VVVSIFESGSHLNHNGNSCIIGPISISRPLSAKVRLAGGYESGEAQVARSVEPTPYHD 69
           + +S+F   S++N N +   + P S+S    +KVR     E GE    R   PTP  D
Sbjct: 1   MALSVFAFPSYINRNPSLKYLKPSSMSSTKYSKVRATTFSEKGEYYSNR--PPTPLLD 56


>At3g16490.1 68416.m02105 calmodulin-binding family protein contains
           IQ calmodulin-binding motif, Pfam:PF00612
          Length = 389

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
 Frame = +1

Query: 220 LSKIETTTTDVPDNDLNFFHEDSSLQYLDESYISLHKEEI----RRPSKESLKTFERTDP 387
           L + +T+      N  N FH   SL+ LD+S   +H + I     + S  +   ++ T P
Sbjct: 158 LIRAQTSVRSQRINRNNMFHPRHSLERLDDSRSEIHSKRISISVEKQSNHNNNAYDETSP 217


>At3g13000.2 68416.m01620 expressed protein contains Pfam profile
           PF04784: Protein of unknown function, DUF547
          Length = 582

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = +1

Query: 277 HEDSSLQYLDESYISLHKEEIRRPSKESLKTFERTDPDNR-LPSVGEVSFVVRNEAFERG 453
           +  SSL+YL++S   LH+     PS++ +  ++ +  ++    S  E +    N+  E+ 
Sbjct: 144 NSSSSLRYLNQSDSELHQSAEDSPSQDQIVHYQESSSESSPAESTVEQTLDPSNDFLEKR 203

Query: 454 SLRLT 468
            +R T
Sbjct: 204 LMRKT 208


>At3g13000.1 68416.m01619 expressed protein contains Pfam profile
           PF04784: Protein of unknown function, DUF547
          Length = 553

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = +1

Query: 277 HEDSSLQYLDESYISLHKEEIRRPSKESLKTFERTDPDNR-LPSVGEVSFVVRNEAFERG 453
           +  SSL+YL++S   LH+     PS++ +  ++ +  ++    S  E +    N+  E+ 
Sbjct: 115 NSSSSLRYLNQSDSELHQSAEDSPSQDQIVHYQESSSESSPAESTVEQTLDPSNDFLEKR 174

Query: 454 SLRLT 468
            +R T
Sbjct: 175 LMRKT 179


>At5g43000.1 68418.m05244 hypothetical protein 
          Length = 282

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = +1

Query: 151 LNGLEIDMGPMIHELPLWFKWDPLSKIETTTTDVPDNDLNFFHEDSSLQ 297
           LNG+E++ G ++H  PL    +PL  IE     VP         D   Q
Sbjct: 159 LNGIELEQGMVVHVEPL---QEPLDGIELEQELVPQETNRVLGPDQESQ 204


>At3g04240.1 68416.m00448 O-linked N-acetyl glucosamine transferase,
           putative similar to O-GlcNAc transferase, Homo sapiens
           [SP|O15294], Rattus norvegicus [SP|P56558]; contains
           Pfam profile PF00515: TPR Domain; identical to cDNA
           GI:18139886
          Length = 977

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 16/53 (30%), Positives = 22/53 (41%)
 Frame = -3

Query: 373 RTFLNFPSKVFLFLLYEGLYTIRPDIVGYYLRGRNLNRYQERQLWSFLFLKAG 215
           R+    P   F+F  +  LY + P+IV  +     L R     LW   F  AG
Sbjct: 759 RSDYGLPEDKFIFACFNQLYKMDPEIVNTWC--NILKRVPNSALWLLRFPAAG 809


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.317    0.135    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,186,617
Number of Sequences: 28952
Number of extensions: 234571
Number of successful extensions: 611
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 829097472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)