Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_L19
         (555 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49908-1|CAA90093.1|  816|Caenorhabditis elegans Hypothetical pr...    29   3.0  
DQ342049-1|ABC69941.1|  830|Caenorhabditis elegans STIP protein.       29   3.0  
L16685-8|AAO12393.1|  285|Caenorhabditis elegans Hypothetical pr...    28   5.2  
L16685-7|AAO12394.1|  306|Caenorhabditis elegans Hypothetical pr...    28   5.2  
Z96047-3|CAB09412.1|  207|Caenorhabditis elegans Hypothetical pr...    27   9.1  
Z68215-1|CAA92450.1|  517|Caenorhabditis elegans Hypothetical pr...    27   9.1  

>Z49908-1|CAA90093.1|  816|Caenorhabditis elegans Hypothetical
           protein C07E3.1a protein.
          Length = 816

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +2

Query: 272 WERCVQFT-YIQNVIYSNIIYKKYLSRFVSFRCVCLWL 382
           W  C+++  +      +NI+ K +  RF  + C+CLWL
Sbjct: 628 WTACMEWLEFTHPDAIANIVTKYFFPRF--YNCLCLWL 663


>DQ342049-1|ABC69941.1|  830|Caenorhabditis elegans STIP protein.
          Length = 830

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +2

Query: 272 WERCVQFT-YIQNVIYSNIIYKKYLSRFVSFRCVCLWL 382
           W  C+++  +      +NI+ K +  RF  + C+CLWL
Sbjct: 642 WTACMEWLEFTHPDAIANIVTKYFFPRF--YNCLCLWL 677


>L16685-8|AAO12393.1|  285|Caenorhabditis elegans Hypothetical
           protein ZC21.6a protein.
          Length = 285

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
 Frame = +2

Query: 194 KVTVQSYKLRSFIIQT-DGLFYCSILRWERCVQFTYIQNVIY-SNIIYKKYLSRFVSFRC 367
           KV + S K+  +I+     L +C +L    C+   +   + Y SN +   +L  F S   
Sbjct: 54  KVNLTSMKVAKYILMGWIALLFCFLL----CILLVHQGELDYNSNSVIHLFLDDFDSDEF 109

Query: 368 VCLWLIDSCHY 400
           +  WL+D C++
Sbjct: 110 IGEWLVDLCNH 120


>L16685-7|AAO12394.1|  306|Caenorhabditis elegans Hypothetical
           protein ZC21.6b protein.
          Length = 306

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
 Frame = +2

Query: 194 KVTVQSYKLRSFIIQT-DGLFYCSILRWERCVQFTYIQNVIY-SNIIYKKYLSRFVSFRC 367
           KV + S K+  +I+     L +C +L    C+   +   + Y SN +   +L  F S   
Sbjct: 120 KVNLTSMKVAKYILMGWIALLFCFLL----CILLVHQGELDYNSNSVIHLFLDDFDSDEF 175

Query: 368 VCLWLIDSCHY 400
           +  WL+D C++
Sbjct: 176 IGEWLVDLCNH 186


>Z96047-3|CAB09412.1|  207|Caenorhabditis elegans Hypothetical
           protein DY3.3 protein.
          Length = 207

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = -2

Query: 194 LYNIVHYCFFCINLLITEDITRFCNIRY 111
           LY+I+  C FC  ++I + ++ +C  R+
Sbjct: 179 LYHILKICTFCSCIIILQHLSNYCLPRF 206


>Z68215-1|CAA92450.1|  517|Caenorhabditis elegans Hypothetical
           protein C53B4.1 protein.
          Length = 517

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = +1

Query: 241 RRTILL*YIALGTLCTVYLYTKCNILKYYIQEIFISVRV 357
           RRTI L  +  G  C V      NI  +YI  I I + V
Sbjct: 142 RRTIYLSSLLFGIPCVVLSAAITNIYSFYIFRILIGISV 180


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,600,516
Number of Sequences: 27780
Number of extensions: 267929
Number of successful extensions: 601
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)