Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_L19
         (555 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g43920.1 68416.m04701 ribonuclease III family protein similar...    29   1.6  
At1g44800.1 68414.m05132 nodulin MtN21 family protein similar to...    28   4.8  
At4g08300.1 68417.m01371 nodulin MtN21 family protein similar to...    27   6.4  

>At3g43920.1 68416.m04701 ribonuclease III family protein similar to
           RNA helicase/RNAseIII CAF protein [Arabidopsis thaliana]
           GI:6102610; contains Pfam profiles PF02170: PAZ domain,
           PF00636: RNase3 domain
          Length = 1531

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 308 VIYSNIIYKKYLSRFVSFRCVCLWLIDSCHYFTEN 412
           V+   I+     S F+    VCL +ID CH+ T N
Sbjct: 141 VMTPQILLDVLRSAFLKLEMVCLLIIDECHHTTGN 175


>At1g44800.1 68414.m05132 nodulin MtN21 family protein similar to
           MtN21 [Medicago truncatula] GI:2598575; contains Pfam
           profile PF00892: Integral membrane protein
          Length = 370

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +1

Query: 274 GTLCTVYLYTKCNILKYYIQEIFISVR 354
           GTL  VY    C+ + YYIQ I I  R
Sbjct: 249 GTLAAVYSGVVCSGIAYYIQSIVIKQR 275


>At4g08300.1 68417.m01371 nodulin MtN21 family protein similar to
           MtN21 GI:2598575 (root nodule development) from
           [Medicago truncatula]
          Length = 373

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +1

Query: 274 GTLCTVYLYTKCNILKYYIQEIFISVR 354
           GTL  VY    C+ + YYIQ I I  R
Sbjct: 252 GTLAAVYSGVVCSGMAYYIQSIVIRER 278


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,404,723
Number of Sequences: 28952
Number of extensions: 224585
Number of successful extensions: 437
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1053014392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)