Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_L18
         (306 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch...    27   0.62 
SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces po...    25   1.9  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    25   3.3  
SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces po...    24   5.8  
SPBC2D10.18 |abc1|coq8|ABC1 kinase family protein|Schizosaccharo...    24   5.8  
SPCC285.11 |ucp10||UBA/UAS domain protein Ucp10|Schizosaccharomy...    24   5.8  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    23   7.7  

>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 815

 Score = 27.1 bits (57), Expect = 0.62
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 143 PIKDCTSVDLQCRHHLPLSR 84
           P K+C +  L+C +H+P SR
Sbjct: 46  PCKNCKAGKLECTYHMPSSR 65


>SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 622

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +2

Query: 152 QARTAFTNSALLLAEQYGFDGIDLSWQLPK 241
           Q  T F  S+L +A   G+D I L W L K
Sbjct: 531 QGVTEFVPSSLGVALAKGYDEIGLEWSLTK 560


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 24.6 bits (51), Expect = 3.3
 Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
 Frame = +2

Query: 5    NLDIDRAHANYRAITNLKRQFPQLRV---FLTVGGDDDTEDPQKYNL 136
            ++ +  AH  +    N  RQFP L V   F   G D        YNL
Sbjct: 950  SIALSTAHVQHGDTLNYSRQFPNLFVQGAFNRFGYDGSMPSKMSYNL 996


>SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 481

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 15/51 (29%), Positives = 21/51 (41%)
 Frame = +2

Query: 26  HANYRAITNLKRQFPQLRVFLTVGGDDDTEDPQKYNLLLESPQARTAFTNS 178
           H N  AI  L  +FPQL  F    G    E    +N+  +  +    F+ S
Sbjct: 47  HPNKFAIRELSIKFPQLGCFKEENGTYAKEVNVTFNIKADPSEGLLNFSQS 97


>SPBC2D10.18 |abc1|coq8|ABC1 kinase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 610

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +2

Query: 143 ESPQARTAFTNSALLLAEQYGFDGIDL 223
           ES Q   A  NS   LAE + FD  D+
Sbjct: 517 ESAQMIDAHINSIFTLAEPFAFDAPDV 543


>SPCC285.11 |ucp10||UBA/UAS domain protein Ucp10|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 427

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +2

Query: 2   ENLDIDRAHANYRAITNLKRQFPQLRVFLTVGGDDDTE 115
           E++D         A+T +KR +    +F T   +DD+E
Sbjct: 120 EHIDFFTDGGYMEALTRIKRNYGVALLFFTSSKNDDSE 157


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 297  FLMLCQKDPILERIFFGFLFGN 232
            F MLC K PI E + +   FG+
Sbjct: 1073 FTMLCHKQPIEEILNYASNFGH 1094


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,128,686
Number of Sequences: 5004
Number of extensions: 19159
Number of successful extensions: 61
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 77794588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)