Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_L18
(306 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0234 + 15187065-15188241,15188316-15188494 44 2e-05
04_03_0649 - 18402976-18403220,18403305-18404499 38 0.002
08_01_0192 + 1594530-1594682,1594755-1594955,1595051-1595280,159... 30 0.31
10_08_0009 + 14075929-14076789 29 0.72
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132 29 0.95
04_04_1630 - 34896021-34896143,34896329-34896403,34896500-348965... 27 2.2
12_02_0918 - 24299620-24299748,24299890-24300037,24303105-243032... 27 2.9
10_08_0011 + 14088375-14089241 27 3.8
10_02_0002 - 4018145-4018545,4018563-4018605 27 3.8
02_05_1071 - 33876061-33877308,33877593-33877898 27 3.8
08_01_1069 + 10916376-10916448,10917331-10918031,10918222-109184... 26 5.1
05_03_0086 + 8279518-8280320,8280923-8281844 26 5.1
03_02_1021 + 13254765-13255092,13255201-13255355 26 5.1
02_01_0689 + 5137506-5137591,5138641-5138709,5139489-5139580,513... 26 5.1
12_02_0277 + 16682836-16684368 25 8.9
12_02_0275 + 16662206-16663738 25 8.9
09_04_0232 - 15882589-15882720,15882799-15882889,15882987-158830... 25 8.9
08_02_0690 + 20071280-20071531,20071613-20071792,20071963-20072253 25 8.9
04_04_0312 + 24314940-24315143,24316074-24316253,24316801-243170... 25 8.9
>11_04_0234 + 15187065-15188241,15188316-15188494
Length = 451
Score = 44.4 bits (100), Expect = 2e-05
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Frame = +2
Query: 74 LRVFLTVGGDDDTEDPQK--YNLLLESPQARTAFTNSALLLAEQYGFDGIDLSWQLP 238
++ L++G D+ ED ++ + R AF NS++ LA GFDG+DL+W+ P
Sbjct: 109 VKTILSIGTDEFREDVSNAAFSRMASEKNLRRAFINSSIELARANGFDGLDLAWRFP 165
>04_03_0649 - 18402976-18403220,18403305-18404499
Length = 479
Score = 37.9 bits (84), Expect = 0.002
Identities = 15/41 (36%), Positives = 26/41 (63%)
Frame = +2
Query: 116 DPQKYNLLLESPQARTAFTNSALLLAEQYGFDGIDLSWQLP 238
DP + + P +R AF +A+ +A + GFDG+D++W+ P
Sbjct: 131 DPA-FAAMAADPASRAAFIGAAVKVARENGFDGLDVAWRFP 170
>08_01_0192 +
1594530-1594682,1594755-1594955,1595051-1595280,
1595596-1595766,1595902-1596007,1596339-1596545,
1596638-1596802
Length = 410
Score = 30.3 bits (65), Expect = 0.31
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +2
Query: 170 TNSALLLAEQYGFDGIDLSWQLPKRKPKKIRSSIGSFW 283
T +L+ E + FD L+W + R P +I++++ +W
Sbjct: 339 TKKMILVGEVFRFDLDTLTWSVIGRMPFRIKTALAGYW 376
>10_08_0009 + 14075929-14076789
Length = 286
Score = 29.1 bits (62), Expect = 0.72
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Frame = +2
Query: 17 DRAHANYRAITNLKRQFPQLRVFLTVGGDDDTEDPQKYNLLLESPQARTAFTNSALL--- 187
D A+ + A+ K P L V L +GGD T N + A+ +A
Sbjct: 62 DTANLSPAAVAAAKAAHPNLSVILALGGD--TVQNTGVNATFAPTSSVDAWVRNAADSVS 119
Query: 188 -LAEQYGFDGIDLSWQ 232
L + YG DG+D+ ++
Sbjct: 120 GLIDAYGLDGVDVDYE 135
>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
Length = 5436
Score = 28.7 bits (61), Expect = 0.95
Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 1/82 (1%)
Frame = +2
Query: 59 RQFPQLRVFLTVGGDDDTEDPQKYNLLLESPQARTAFTNSALLLAEQYGFDGIDLSWQLP 238
R P L + + D D +YNLL + A +Y FDG L L
Sbjct: 5215 RMSPILNMVIEPSFDFDDPPTHQYNLLEPTSIITRKHVLGAHTWDHEYNFDGASLEKTLV 5274
Query: 239 KRKPKK-IRSSIGSFWHSIKKT 301
KP K +++ F +KK+
Sbjct: 5275 LHKPTKCFEATLVEFSKDMKKS 5296
>04_04_1630 - 34896021-34896143,34896329-34896403,34896500-34896556,
34897176-34897352,34897426-34897492,34898043-34898101,
34898188-34898241,34898455-34898604,34898709-34898918,
34898980-34899039,34899399-34899527,34899616-34899720,
34899935-34900024,34900630-34900695,34901047-34901115,
34901348-34901467,34901572-34901634,34901681-34901817,
34902070-34902160,34902298-34902463,34902700-34904172,
34905666-34905940,34906322-34906819,34906996-34907145,
34907840-34907911,34908006-34908266,34908478-34908558,
34908745-34908996,34909323-34909382,34909602-34909853,
34910385-34910549,34910589-34910849,34911267-34912307,
34913398-34913457,34914055-34914165,34914448-34914534,
34915227-34915300,34915397-34915490,34915644-34915689,
34916397-34916521
Length = 2501
Score = 27.5 bits (58), Expect = 2.2
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 8 LDIDRAHANYRAITNLKRQFPQLRVFL 88
+ +D ANYRA+ L + FP ++ F+
Sbjct: 2373 ITLDTPGANYRAVWALSKYFPNVKTFV 2399
>12_02_0918 -
24299620-24299748,24299890-24300037,24303105-24303280,
24305870-24305917,24306005-24306116,24306209-24306468
Length = 290
Score = 27.1 bits (57), Expect = 2.9
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 20 RAHANYRAITNLKRQFPQLRVFLTVGGDDDTEDPQK 127
RAH + + R+ RV VGG DD ED ++
Sbjct: 109 RAHPSLHVLVGWARRMIGFRVSTPVGGCDDEEDGRR 144
>10_08_0011 + 14088375-14089241
Length = 288
Score = 26.6 bits (56), Expect = 3.8
Identities = 17/73 (23%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = +2
Query: 17 DRAHANYRAITNLKRQFPQLRVFLTVGGDDDTEDPQKYNLLLESPQARTAFTNSALL-LA 193
D A+ + + +K P + V + +GGD +D K S + A +++ +
Sbjct: 62 DTANLSPADVAAVKAAHPNVSVMVGLGGDS-VQDTAKVFFSPTSVDSWVANAVASVSGII 120
Query: 194 EQYGFDGIDLSWQ 232
+ YG DG+D+ ++
Sbjct: 121 DAYGLDGVDVDYE 133
>10_02_0002 - 4018145-4018545,4018563-4018605
Length = 147
Score = 26.6 bits (56), Expect = 3.8
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +2
Query: 17 DRAHANYRAITNLKRQFPQLRVFLTVGGDDDTEDPQK 127
DRA A+YR + + + G DDD DP++
Sbjct: 111 DRAVADYRNVARVWTRVVSFGTTRGFGSDDDPSDPER 147
>02_05_1071 - 33876061-33877308,33877593-33877898
Length = 517
Score = 26.6 bits (56), Expect = 3.8
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -1
Query: 186 RRAELVKAVRACGDSNKRLYFCGSSVSSSPP-TVKNTRN*GNCLFKFVI 43
RR+ L+ + N R + C SS SS+PP T + + G+ L + ++
Sbjct: 6 RRSRLLALLVGASRPNPRPFCCSSSSSSAPPATAREDGDGGDLLSRCLL 54
>08_01_1069 +
10916376-10916448,10917331-10918031,10918222-10918443,
10918526-10919351,10919437-10919574,10920431-10920569,
10920655-10920781,10921895-10921936,10922089-10922160,
10922491-10922589,10922694-10922735,10922947-10923027,
10923129-10923179,10923265-10923346,10923741-10923835,
10924739-10924810,10924907-10925023,10925176-10925244,
10925507-10925573,10925709-10925950
Length = 1118
Score = 26.2 bits (55), Expect = 5.1
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +2
Query: 161 TAFTNSALLLAEQYGFDGIDLSWQLPKRKPKKIRSSI 271
TAF S +L+ + D ID+ W R PK+ R+ +
Sbjct: 300 TAFIRSNILMLNR---DEIDILWDAKDRFPKEFRAEV 333
>05_03_0086 + 8279518-8280320,8280923-8281844
Length = 574
Score = 26.2 bits (55), Expect = 5.1
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 134 LLLESPQARTAFTNSALLLAEQYGFDGIDLSWQL 235
LL++ P R AFT A + + FDG+ +W L
Sbjct: 478 LLVKEPHKRIAFTRGATEIKQHPFFDGV--NWAL 509
>03_02_1021 + 13254765-13255092,13255201-13255355
Length = 160
Score = 26.2 bits (55), Expect = 5.1
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +2
Query: 101 DDDTEDPQKYNLLLESPQARTAFTNSALLLA 193
DDD Q +NLL++ PQ A A+L A
Sbjct: 85 DDDLFFDQTHNLLVDPPQPPAALKTDAVLKA 115
>02_01_0689 + 5137506-5137591,5138641-5138709,5139489-5139580,
5139967-5140289,5141373-5142479,5142593-5143279,
5144214-5144522,5145488-5145823,5146165-5146263,
5146676-5146940,5146950-5147104,5147666-5149723,
5150168-5150367,5150662-5150718,5150965-5151079
Length = 1985
Score = 26.2 bits (55), Expect = 5.1
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +2
Query: 170 TNSALLLAEQYGFDGIDLSWQLPKRKPKKIRSS 268
T +A++L ++YG + LPK++ KKI+ S
Sbjct: 1550 TKAAVILEQKYGLQLDQDTSDLPKKRGKKIKLS 1582
>12_02_0277 + 16682836-16684368
Length = 510
Score = 25.4 bits (53), Expect = 8.9
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = -3
Query: 118 IFSVVITSHCQEHAQLRKLSFQVCDRSIISVRPIN 14
++ + +TS +++A+LRKL D+SII + I+
Sbjct: 271 VYDLDLTS-VKDNAELRKLFLDTTDKSIIVIEDID 304
>12_02_0275 + 16662206-16663738
Length = 510
Score = 25.4 bits (53), Expect = 8.9
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = -3
Query: 118 IFSVVITSHCQEHAQLRKLSFQVCDRSIISVRPIN 14
++ + +TS +++A+LRKL D+SII + I+
Sbjct: 271 VYDLDLTS-VKDNAELRKLFLDTTDKSIIVIEDID 304
>09_04_0232 -
15882589-15882720,15882799-15882889,15882987-15883087,
15883494-15883592,15883693-15883830,15883918-15884508,
15884819-15884989,15885068-15885203,15885561-15885592,
15886280-15886336,15886434-15886686,15886762-15886850,
15887181-15887234,15887498-15887689,15887777-15887938
Length = 765
Score = 25.4 bits (53), Expect = 8.9
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +2
Query: 92 VGGDDDTEDPQKYNLLLESP 151
V GD+D DPQ ++ L+ P
Sbjct: 95 VWGDNDVSDPQAFSCLISPP 114
>08_02_0690 + 20071280-20071531,20071613-20071792,20071963-20072253
Length = 240
Score = 25.4 bits (53), Expect = 8.9
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +1
Query: 34 LSSDHKLEKTVSSIARVLDSGR 99
L DH+L +++ S+A L SGR
Sbjct: 48 LPPDHELRRSLDSVAEALASGR 69
>04_04_0312 +
24314940-24315143,24316074-24316253,24316801-24317030,
24317205-24317375,24317685-24317790,24318099-24318305,
24318646-24318806,24319001-24319103
Length = 453
Score = 25.4 bits (53), Expect = 8.9
Identities = 10/38 (26%), Positives = 21/38 (55%)
Frame = +2
Query: 170 TNSALLLAEQYGFDGIDLSWQLPKRKPKKIRSSIGSFW 283
T +L+ E + F+ L W + R P +I++++ +W
Sbjct: 349 TKKMVLVGEVFRFNLNTLEWTVIGRLPFRIKTTLVGYW 386
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,257,533
Number of Sequences: 37544
Number of extensions: 123243
Number of successful extensions: 380
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 380
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 363831720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -