Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_L18
         (306 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.)              55   1e-08
SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)              54   3e-08
SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)              49   9e-07
SB_55143| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)              49   9e-07
SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.)              39   0.001
SB_24154| Best HMM Match : Glyco_hydro_18 (HMM E-Value=2.2e-32)        38   0.002
SB_20930| Best HMM Match : F5_F8_type_C (HMM E-Value=5.2e-08)          28   1.3  
SB_42044| Best HMM Match : ubiquitin (HMM E-Value=1.2e-06)             27   4.0  
SB_14516| Best HMM Match : PH (HMM E-Value=6.8e-06)                    27   4.0  
SB_27646| Best HMM Match : CbiK (HMM E-Value=2.2)                      26   5.3  
SB_17729| Best HMM Match : TPR_2 (HMM E-Value=0.41)                    26   5.3  
SB_48319| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.0  
SB_49146| Best HMM Match : GntR (HMM E-Value=1.8e-16)                  26   7.0  
SB_14683| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.2  
SB_54944| Best HMM Match : Gal_Lectin (HMM E-Value=9.5e-05)            25   9.2  
SB_9925| Best HMM Match : Kinesin (HMM E-Value=0.00094)                25   9.2  

>SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 807

 Score = 55.2 bits (127), Expect = 1e-08
 Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
 Frame = +2

Query: 35  YRAITNLKRQFPQLRVFLTVGGDDDTEDP-QKYNLLLESPQARTAFTNSALLLAEQYGFD 211
           Y+ I +LK + P L+  L VGG +    P   ++ ++ S   RT F +S L L+++Y FD
Sbjct: 455 YKEINDLKLKNPSLKTLLAVGGWNHESGPVSPFSQMVASKSNRTTFISSLLQLSDKYDFD 514

Query: 212 GIDLSWQLP 238
           G DL W+ P
Sbjct: 515 GFDLDWEYP 523


>SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
          Length = 829

 Score = 53.6 bits (123), Expect = 3e-08
 Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
 Frame = +2

Query: 8   LDI--DRAHANYRAITNLKRQFPQLRVFLTVGGDDDTEDPQKYNLLLESPQARTAFTNSA 181
           LDI  +  H  Y+ I  LK+  P+L+  + VGG    E    ++ ++ + + R  F  SA
Sbjct: 67  LDIYEENDHELYQRINALKKINPKLKTQIAVGGWTHEEKNSPFSKMVATKEKRAIFIKSA 126

Query: 182 LLLAEQYGFDGIDLSWQLPKRKPKKIRSSIGSF 280
           +     +GFDG+DL W+ P  +    +S  G F
Sbjct: 127 IETLRTHGFDGLDLDWEYPGMRGGSPKSDKGRF 159



 Score = 50.4 bits (115), Expect = 3e-07
 Identities = 25/82 (30%), Positives = 41/82 (50%)
 Frame = +2

Query: 35  YRAITNLKRQFPQLRVFLTVGGDDDTEDPQKYNLLLESPQARTAFTNSALLLAEQYGFDG 214
           Y+ I  LK+  P+L+  + VGG    E    ++ ++ + + R  F  SA+      GFDG
Sbjct: 463 YKRINALKKINPKLKTQIAVGGWTHEEKNSPFSKMVATKEKRAIFIKSAIETLRTNGFDG 522

Query: 215 IDLSWQLPKRKPKKIRSSIGSF 280
           +DL W+ P  +    +S  G F
Sbjct: 523 LDLDWEYPGMRGGSPKSDKGRF 544


>SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
          Length = 569

 Score = 48.8 bits (111), Expect = 9e-07
 Identities = 20/68 (29%), Positives = 37/68 (54%)
 Frame = +2

Query: 35  YRAITNLKRQFPQLRVFLTVGGDDDTEDPQKYNLLLESPQARTAFTNSALLLAEQYGFDG 214
           Y+   +LK + P L+  L VGG +       ++ ++ +  +R  F +S++ +  Q+ FDG
Sbjct: 187 YKEFNDLKLKNPGLKTLLAVGGWNHENYKSPFSRMVRTAASRKVFIDSSIAMLRQWNFDG 246

Query: 215 IDLSWQLP 238
            DL W+ P
Sbjct: 247 FDLDWEYP 254


>SB_55143| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
          Length = 270

 Score = 48.8 bits (111), Expect = 9e-07
 Identities = 20/68 (29%), Positives = 37/68 (54%)
 Frame = +2

Query: 35  YRAITNLKRQFPQLRVFLTVGGDDDTEDPQKYNLLLESPQARTAFTNSALLLAEQYGFDG 214
           Y     LK++ P+L+  L VGG +       ++ ++++   R  F +S + +   +GFDG
Sbjct: 75  YPRFNALKQKNPELKTLLAVGGWNHENANSPFSRMVKTAATRKVFIDSVIRILRTWGFDG 134

Query: 215 IDLSWQLP 238
           +DL W+ P
Sbjct: 135 LDLDWEYP 142


>SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 438

 Score = 38.7 bits (86), Expect = 0.001
 Identities = 20/70 (28%), Positives = 35/70 (50%)
 Frame = +2

Query: 29  ANYRAITNLKRQFPQLRVFLTVGGDDDTEDPQKYNLLLESPQARTAFTNSALLLAEQYGF 208
           A Y+ + +LK     ++  L VGG +    P  +  ++ +   R  F + A+L    + F
Sbjct: 76  AMYKKVNDLKSS-SNMKTLLAVGGWNMGSGP--FQDMVSTASRRKIFIDDAILFLRNHMF 132

Query: 209 DGIDLSWQLP 238
           DG+DL W+ P
Sbjct: 133 DGLDLDWEYP 142


>SB_24154| Best HMM Match : Glyco_hydro_18 (HMM E-Value=2.2e-32)
          Length = 561

 Score = 37.9 bits (84), Expect = 0.002
 Identities = 19/68 (27%), Positives = 34/68 (50%)
 Frame = +2

Query: 35  YRAITNLKRQFPQLRVFLTVGGDDDTEDPQKYNLLLESPQARTAFTNSALLLAEQYGFDG 214
           Y+ + +LK     ++  L VGG +    P  +  ++ +   R  F + A+L    + FDG
Sbjct: 2   YKKVNDLKSS-SNMKTLLAVGGWNMGSGP--FQDMVSTASRRKIFIDDAILFLRNHMFDG 58

Query: 215 IDLSWQLP 238
           +DL W+ P
Sbjct: 59  LDLDWEYP 66


>SB_20930| Best HMM Match : F5_F8_type_C (HMM E-Value=5.2e-08)
          Length = 172

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 21/72 (29%), Positives = 33/72 (45%)
 Frame = -1

Query: 297 FLMLCQKDPILERIFFGFLFGNCQDRSIPSKPYCSARRRAELVKAVRACGDSNKRLYFCG 118
           +L    +D   E++F G  +G          P+  AR    +VK+V      +  +Y C 
Sbjct: 90  YLPYLDEDGTKEKVFNG-AWGRYLAFKRRIYPHVFARYIRIIVKSVFRSASIHVEIYGCV 148

Query: 117 SSVSSSPPTVKN 82
           S +SSSPP  +N
Sbjct: 149 SRLSSSPPPREN 160


>SB_42044| Best HMM Match : ubiquitin (HMM E-Value=1.2e-06)
          Length = 1425

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +2

Query: 125 KYNLLLESPQARTAFTNSALLLAEQYGFDGID--LSWQLPKRKPKKIR 262
           KY+L + +   +     +A L    Y FDGI   + + + +R+P  IR
Sbjct: 378 KYSLRVAADSRKNTIVRAATLEDSDYMFDGIPELIQFYISERRPVSIR 425


>SB_14516| Best HMM Match : PH (HMM E-Value=6.8e-06)
          Length = 438

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -1

Query: 228 QDRSIPSKPYCSARRRAELVKAVRACGDSNKRLY 127
           +D S  S PYC+ R   ELV  +    D  +R Y
Sbjct: 20  KDMSGKSDPYCAVRIDNELVACISVVRDLTERSY 53


>SB_27646| Best HMM Match : CbiK (HMM E-Value=2.2)
          Length = 423

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 83  FLTVGGDDDTEDPQKYNLLLESPQAR 160
           F+TVGGDD++ D +    +L +P  +
Sbjct: 149 FITVGGDDESADDELVATVLLTPNLK 174


>SB_17729| Best HMM Match : TPR_2 (HMM E-Value=0.41)
          Length = 1234

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -1

Query: 216  IPSKPYCSARRRAELVKAVRACGDSNKRLYFCGSS 112
            + +K Y  A  + + +KA+   GD+ K ++F G S
Sbjct: 1047 LATKKYTQAGNKMKAMKALLKSGDTEKIVFFAGVS 1081


>SB_48319| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 965

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 12/20 (60%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = +2

Query: 221 LSWQLPKRKPKKIRS-SIGS 277
           LSWQLP+R+ K+ R  S GS
Sbjct: 711 LSWQLPRRRGKQSRGLSFGS 730


>SB_49146| Best HMM Match : GntR (HMM E-Value=1.8e-16)
          Length = 410

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +2

Query: 149 PQARTAFTNSALLLAEQY 202
           PQA T  T+SALLL+ Q+
Sbjct: 243 PQANTLLTDSALLLSSQH 260


>SB_14683| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 84

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +2

Query: 200 YGFDGIDLSWQLPKRKPKKIRSSIGSFWHSIKKT 301
           Y F  + L+  LP   P + R S+  +W+ I+ +
Sbjct: 17  YNFVAVSLNILLPSSSPYEPRKSLLKYWNCIQSS 50


>SB_54944| Best HMM Match : Gal_Lectin (HMM E-Value=9.5e-05)
          Length = 392

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = -1

Query: 231 CQDRSIPSKPYCSARRRAELVKAVRACGDSNKRL 130
           CQ   IPSK YC+ +      K    CG   + L
Sbjct: 171 CQHDVIPSKGYCAQQEMRVNEKVFDLCGHERRCL 204


>SB_9925| Best HMM Match : Kinesin (HMM E-Value=0.00094)
          Length = 1671

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/51 (23%), Positives = 23/51 (45%)
 Frame = -1

Query: 225 DRSIPSKPYCSARRRAELVKAVRACGDSNKRLYFCGSSVSSSPPTVKNTRN 73
           D ++ ++ YCS       +   + CG ++K+    G+S   S    K+  N
Sbjct: 557 DYNLENREYCSQEHDDSELSYGQICGGTSKKRELSGNSSEFSGDLTKDNHN 607


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,325,291
Number of Sequences: 59808
Number of extensions: 142043
Number of successful extensions: 539
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 377252670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)