Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_L18
         (306 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g19800.1 68417.m02904 glycosyl hydrolase family 18 protein si...    49   5e-07
At4g19810.1 68417.m02905 glycosyl hydrolase family 18 protein si...    48   9e-07
At4g19720.1 68417.m02896 glycosyl hydrolase family 18 protein si...    46   7e-06
At4g19820.1 68417.m02906 glycosyl hydrolase family 18 protein si...    42   8e-05
At4g19730.1 68417.m02897 glycosyl hydrolase family 18 protein si...    41   2e-04
At4g19770.1 68417.m02901 glycosyl hydrolase family 18 protein si...    38   0.001
At4g19760.1 68417.m02900 glycosyl hydrolase family 18 protein si...    34   0.016
At4g19750.1 68417.m02899 glycosyl hydrolase family 18 protein si...    33   0.029
At4g19740.1 68417.m02898 glycosyl hydrolase family 18 protein si...    32   0.066
At2g22650.1 68415.m02684 FAD-dependent oxidoreductase family pro...    30   0.35 
At4g18010.2 68417.m02680 inositol polyphosphate 5-phosphatase II...    28   1.1  
At3g26920.1 68416.m03368 F-box family protein contains F-box dom...    28   1.1  
At1g13540.1 68414.m01587 expressed protein                             28   1.4  
At3g27220.1 68416.m03403 kelch repeat-containing protein contain...    27   1.9  
At5g44260.1 68418.m05416 zinc finger (CCCH-type) family protein ...    27   2.5  
At4g35720.1 68417.m05069 expressed protein contains Pfam profile...    25   7.6  
At4g00630.1 68417.m00087 K+ efflux antiporter, putative (KEA2) M...    25   7.6  
At3g27730.1 68416.m03462 ATP-dependent DNA helicase, putative si...    25   7.6  

>At4g19800.1 68417.m02904 glycosyl hydrolase family 18 protein
           similar to chitinase, class V GI:899342 from [Nicotiana
           tabacum]
          Length = 398

 Score = 49.2 bits (112), Expect = 5e-07
 Identities = 21/74 (28%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
 Frame = +2

Query: 29  ANYRAITN-LKRQFPQLRVFLTVGGDDDTEDPQKYNLLLESPQARTAFTNSALLLAEQYG 205
           A + A T  ++++ P ++  L++GG +  +D   +  +  +P +R +F  S + +A  YG
Sbjct: 53  APFHAFTETVQQRNPHVKTLLSIGGGNADKDA--FASMASNPDSRASFIQSTITVARSYG 110

Query: 206 FDGIDLSWQLPKRK 247
           F G+DL W+ P+ +
Sbjct: 111 FHGLDLDWEYPRNE 124


>At4g19810.1 68417.m02905 glycosyl hydrolase family 18 protein
           similar to chitinase/lysozyme GI:467689 from [Nicotiana
           tabacum]
          Length = 379

 Score = 48.4 bits (110), Expect = 9e-07
 Identities = 20/62 (32%), Positives = 37/62 (59%)
 Frame = +2

Query: 53  LKRQFPQLRVFLTVGGDDDTEDPQKYNLLLESPQARTAFTNSALLLAEQYGFDGIDLSWQ 232
           ++R+ P ++  L++GG     D   Y  +  +P +R +F +S++ +A  YGF G+DL W+
Sbjct: 83  VQRRNPSVKTLLSIGGG--IADKTAYASMASNPTSRKSFIDSSIRVARSYGFHGLDLDWE 140

Query: 233 LP 238
            P
Sbjct: 141 YP 142


>At4g19720.1 68417.m02896 glycosyl hydrolase family 18 protein
           similar to chitinase, class V GI:899342 from [Nicotiana
           tabacum]
          Length = 363

 Score = 45.6 bits (103), Expect = 7e-06
 Identities = 21/63 (33%), Positives = 37/63 (58%)
 Frame = +2

Query: 53  LKRQFPQLRVFLTVGGDDDTEDPQKYNLLLESPQARTAFTNSALLLAEQYGFDGIDLSWQ 232
           +K++ P ++  L++GG +   D   +  +  +P +R +F  SA+  A  Y FDG+DL W+
Sbjct: 72  VKKKNPHVQTLLSIGGRN--ADKSAFASMASNPTSRKSFIWSAISSARYYRFDGLDLVWK 129

Query: 233 LPK 241
            PK
Sbjct: 130 YPK 132


>At4g19820.1 68417.m02906 glycosyl hydrolase family 18 protein
           similar to chitinase/lysozyme GI:467689 from [Nicotiana
           tabacum]
          Length = 366

 Score = 41.9 bits (94), Expect = 8e-05
 Identities = 19/62 (30%), Positives = 36/62 (58%)
 Frame = +2

Query: 53  LKRQFPQLRVFLTVGGDDDTEDPQKYNLLLESPQARTAFTNSALLLAEQYGFDGIDLSWQ 232
           ++R+ P ++  L++GGD        +  +  +P +R  F +S++ LA   GF G+DL+W+
Sbjct: 81  VRRRNPTVKTLLSIGGDFTYNFA--FASMASNPTSRKLFISSSIKLARSCGFHGLDLNWK 138

Query: 233 LP 238
            P
Sbjct: 139 YP 140


>At4g19730.1 68417.m02897 glycosyl hydrolase family 18 protein
           similar to chitinase, class V GI:505267 from [Nicotiana
           tabacum]
          Length = 332

 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 18/62 (29%), Positives = 35/62 (56%)
 Frame = +2

Query: 53  LKRQFPQLRVFLTVGGDDDTEDPQKYNLLLESPQARTAFTNSALLLAEQYGFDGIDLSWQ 232
           +K + PQ++  L++GG +       +  +  + Q+R  F +S + +A   GF G+DL+W+
Sbjct: 74  VKIRNPQVKTLLSIGGKNANNSA--FASMASNHQSRKTFIDSWIFIARSNGFHGLDLAWE 131

Query: 233 LP 238
            P
Sbjct: 132 YP 133


>At4g19770.1 68417.m02901 glycosyl hydrolase family 18 protein
           similar to chitinase, class V GI:899342 from [Nicotiana
           tabacum]
          Length = 261

 Score = 37.9 bits (84), Expect = 0.001
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +2

Query: 137 LLESPQARTAFTNSALLLAEQYGFDGIDLSWQLPK 241
           +  S   R +F  S + +A  YGFDG+DL W+ P+
Sbjct: 1   MASSSYGRKSFILSTISIARSYGFDGLDLDWEYPR 35


>At4g19760.1 68417.m02900 glycosyl hydrolase family 18 protein
           similar to chitinase, class V GI:505267 from [Nicotiana
           tabacum]
          Length = 365

 Score = 34.3 bits (75), Expect = 0.016
 Identities = 17/62 (27%), Positives = 34/62 (54%)
 Frame = +2

Query: 53  LKRQFPQLRVFLTVGGDDDTEDPQKYNLLLESPQARTAFTNSALLLAEQYGFDGIDLSWQ 232
           +K +   ++  L++GG D   D      +  + + R AF +S++ +A +  F G+DL+W+
Sbjct: 79  VKEKNTDVQTLLSIGGKD--ADKAVLASMASNSKNRKAFIDSSIDIARKKDFYGLDLAWE 136

Query: 233 LP 238
            P
Sbjct: 137 YP 138


>At4g19750.1 68417.m02899 glycosyl hydrolase family 18 protein
           similar to chitinase, class V GI:899342 from [Nicotiana
           tabacum]
          Length = 362

 Score = 33.5 bits (73), Expect = 0.029
 Identities = 17/62 (27%), Positives = 34/62 (54%)
 Frame = +2

Query: 53  LKRQFPQLRVFLTVGGDDDTEDPQKYNLLLESPQARTAFTNSALLLAEQYGFDGIDLSWQ 232
           +K +   ++  L++GG D   D      +  + + R AF +S++ +A +  F G+DL+W+
Sbjct: 71  VKDKNTDVQTLLSIGGKD--ADKAVLASMASNSKNRKAFIDSSIDIARKKDFYGLDLAWE 128

Query: 233 LP 238
            P
Sbjct: 129 YP 130


>At4g19740.1 68417.m02898 glycosyl hydrolase family 18 protein
           similar to chitinase, class V GI:899342 from [Nicotiana
           tabacum]
          Length = 289

 Score = 32.3 bits (70), Expect = 0.066
 Identities = 11/34 (32%), Positives = 23/34 (67%)
 Frame = +2

Query: 137 LLESPQARTAFTNSALLLAEQYGFDGIDLSWQLP 238
           ++ +  +R +F +S++ +A   GF G+DL+W+ P
Sbjct: 79  IVSNRTSRESFISSSISIARSLGFYGLDLAWEYP 112


>At2g22650.1 68415.m02684 FAD-dependent oxidoreductase family
           protein
          Length = 420

 Score = 29.9 bits (64), Expect = 0.35
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 203 GFDGIDLSWQLPKRKPKKIRSSI 271
           GF GI ++W L K  PK++R S+
Sbjct: 30  GFAGISVAWHLLKESPKELRLSV 52


>At4g18010.2 68417.m02680 inositol polyphosphate 5-phosphatase II
           (IP5PII) nearly identical to inositol polyphosphate
           5-phosphatase II [Arabidopsis thaliana] GI:10444263
           isoform contains an AT-acceptor splice site at intron 6
          Length = 613

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +2

Query: 137 LLESPQARTAFTNSALLLAEQYGFDGIDLSW-QLPKRKPKKIRSSIG 274
           L E+P   + F + A  L     F+ ++LSW  + +    KIR+S G
Sbjct: 292 LPENPSGASRFASEARQLKRSRSFETLNLSWNDIKEEDGDKIRNSYG 338


>At3g26920.1 68416.m03368 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 565

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 294 LMLCQKDPILERIFFGFLFGNCQ 226
           L+L  K P LE +  GF FG C+
Sbjct: 336 LLLSNKAPFLESLHLGFRFGECR 358


>At1g13540.1 68414.m01587 expressed protein 
          Length = 381

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 71  QLRVFLTVGGDDDTEDPQKYNLLLESPQARTAF 169
           +L V   +GGDD T DP  +  +L+ P +   +
Sbjct: 65  KLAVTFNIGGDDSTRDPVVFIPVLDKPLSSNCY 97


>At3g27220.1 68416.m03403 kelch repeat-containing protein contains
           Pfam PF01344: Kelch motif (4 repeats); contains Prosite
           PS00334: Myb DNA-binding domain repeat signature 2;
           similar to Male enhanced Antigen-1 (peas) (GI:20513270)
           [Mus musculus]
          Length = 426

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 10/39 (25%), Positives = 22/39 (56%)
 Frame = +2

Query: 170 TNSALLLAEQYGFDGIDLSWQLPKRKPKKIRSSIGSFWH 286
           T   +L+ E + F    L+W +  R P ++++++  FW+
Sbjct: 355 TKRLVLVGEIFRFQLDTLTWSVIGRLPYRVKTAMAGFWN 393


>At5g44260.1 68418.m05416 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 381

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -1

Query: 123 CGSSVSSSPPTVKNTRN*GNCLF 55
           CG S SSSP +V + +N   CLF
Sbjct: 177 CGGSPSSSPASVLSNKNNRCCLF 199


>At4g35720.1 68417.m05069 expressed protein contains Pfam profile
           PF03087: Arabidopsis protein of unknown function
          Length = 325

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 219 SIPSKPYCSARRRAELVKAVRACGDSN 139
           S+P + + S RR  E+V  VRA G S+
Sbjct: 20  SLPVRSHPSVRRIQEVVSKVRALGSSS 46


>At4g00630.1 68417.m00087 K+ efflux antiporter, putative (KEA2)
           Monovalent cation:proton antiporter family 2 (CPA2
           family) member, PMID:11500563; similar to
           SWISS-PROT:SPP03819 Glutathione-regulated
           potassium-efflux system protein kefC (K(+)/H(+)
           antiporter) [Escherichia coli]
          Length = 627

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 14  IDRAHANYRAITNLKRQFPQLRVFL 88
           +D   ANYR +  L + FP ++ F+
Sbjct: 500 LDTPGANYRCVWALSKYFPNVKTFV 524


>At3g27730.1 68416.m03462 ATP-dependent DNA helicase, putative
           similar to SP|P51979 ATP-dependent DNA helicase MER3 (EC
           3.6.1.-) {Saccharomyces cerevisiae}; contains Pfam
           profiles PF00270: DEAD/DEAH box helicase, PF02889: Sec63
           domain
          Length = 1113

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = +2

Query: 119 PQKYNLLLESPQARTAFTNSALLLAEQYGFDGIDLSWQLPKRK 247
           P    +LLE P  +T  T  A L+ E+Y   GIDL   L  +K
Sbjct: 800 PYSVTVLLERPHQQTKVTVKADLIFEEY--IGIDLHETLLLKK 840


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,942,579
Number of Sequences: 28952
Number of extensions: 102962
Number of successful extensions: 333
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 333
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 311361520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)