Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_L17
         (515 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC191.09c |gst1||glutathione S-transferase Gst1|Schizosaccharo...    43   3e-05
SPCC965.07c |gst2||glutathione S-transferase Gst2|Schizosaccharo...    38   9e-04
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc...    27   1.7  
SPCC188.02 |par1||protein phosphatase regulatory subunit Par1 |S...    25   6.7  
SPBC19C7.07c |sen34||tRNA-splicing endonuclease subunit Sen34|Sc...    25   8.9  
SPBC14C8.15 |||triglyceride lipase-cholesterol esterase |Schizos...    25   8.9  
SPAC1834.07 |klp3|krp1|kinesin-like protein Klp3|Schizosaccharom...    25   8.9  
SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual     25   8.9  

>SPCC191.09c |gst1||glutathione S-transferase
           Gst1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 229

 Score = 42.7 bits (96), Expect = 3e-05
 Identities = 32/91 (35%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
 Frame = +1

Query: 145 MMAFDILNLPVEMVDVNLLEKEHLKPEFLKKNPVHTVPVL---EHGDLIITDSHAILMYL 315
           + A   L+L  E   VN  + E   PE L  NP   VP L    + D  I +S AIL+YL
Sbjct: 19  VQALKELDLTYETRYVNFSKNEQKSPEHLALNPNGRVPTLIDHHNNDYTIWESDAILIYL 78

Query: 316 FDVYGKDDNL-YPKDVKKRAIVNQRLFFDTA 405
            D Y  +  +  P+D  +   V Q LFF  +
Sbjct: 79  ADKYDTERKISLPRDHPEYYKVIQYLFFQAS 109


>SPCC965.07c |gst2||glutathione S-transferase
           Gst2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 230

 Score = 37.9 bits (84), Expect = 9e-04
 Identities = 27/80 (33%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
 Frame = +1

Query: 106 LYKIDASPPARAAMMAFDILNLPVEMVDVNLLEKEHLKPEFLKKNPVHTVPVL---EHGD 276
           LY     P     ++A   LNL  E +  +  + E    E L  NP   VP L   ++ D
Sbjct: 6   LYSHAGGPNPWKVVLALKELNLSYEQIFYDFQKGEQKCKEHLALNPNGRVPTLVDHKNND 65

Query: 277 LIITDSHAILMYLFDVYGKD 336
             I +S AIL+YL D Y  D
Sbjct: 66  YTIWESDAILIYLADKYDTD 85


>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
           Thi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = +3

Query: 276 SYYH*QSRDIDVLVRRIWKR*QSLSERCQKEGHRESKAFL 395
           S ++  S+DI  +V ++W+  + LS RC  E  RES  +L
Sbjct: 592 SLHYENSQDIQAVVTKLWQVLEFLSSRC--EFARESLNYL 629


>SPCC188.02 |par1||protein phosphatase regulatory subunit Par1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 548

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +1

Query: 313 LFDVYGKDDNLYPKDVKKRAIVNQRLFFDTAVLFSRLSNVTYPAFVH 453
           +FD      +LY K+VK+ A+  Q L    +V    +    YP+ VH
Sbjct: 132 VFDFNDPSTDLYGKEVKREAL--QDLIDLISVRKEAIDESLYPSIVH 176


>SPBC19C7.07c |sen34||tRNA-splicing endonuclease subunit
           Sen34|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 284

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +1

Query: 151 AFDILNLPVEMVDVNLLEKEHLKPEFLKKNPV 246
           +FD+  +PV+ V   + EK  +  +F K+  V
Sbjct: 140 SFDLSWIPVDTVTTRIAEKSSMNDDFHKEEDV 171


>SPBC14C8.15 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 460

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = +1

Query: 136 RAAMMAFDILNLPVEMV---DVNLLEKEHLKPEFLKKNPVHTVPVLEHGDLIITDS 294
           R A    + + LP+ +V   + N+++ E LK +    +    +P  EH D+I+ D+
Sbjct: 361 RIARYPIENIRLPITLVYGSNDNMVDIETLKTQLPPLSQCIQIPNYEHLDIIMGDT 416


>SPAC1834.07 |klp3|krp1|kinesin-like protein
           Klp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 554

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 6/42 (14%)
 Frame = -3

Query: 381 IHDGPLFDIFRIKIVIFSIYVEQVHQY------RVTVSDNKI 274
           I D P    + +K+    IY+E++H        R+TV ++K+
Sbjct: 118 IRDSPSTTEYEVKVSYMEIYMEKIHDLLSEKNDRLTVHEDKL 159


>SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 554

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 408 NGSIKEKPLIHDGPLFDIFRI 346
           N ++ EK L+HD  L D FR+
Sbjct: 373 NFNVTEKKLLHDVDLKDYFRV 393


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,150,981
Number of Sequences: 5004
Number of extensions: 44819
Number of successful extensions: 119
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)