Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_L17
         (515 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48592| Best HMM Match : Galactosyl_T (HMM E-Value=1.5e-26)          38   0.005
SB_3922| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.32 
SB_36474| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_34255| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_45992| Best HMM Match : HCO3_cotransp (HMM E-Value=0)               27   9.2  
SB_55898| Best HMM Match : Carb_anhydrase (HMM E-Value=3.6)            27   9.2  
SB_14572| Best HMM Match : ANF_receptor (HMM E-Value=6.7e-18)          27   9.2  

>SB_48592| Best HMM Match : Galactosyl_T (HMM E-Value=1.5e-26)
          Length = 492

 Score = 37.9 bits (84), Expect = 0.005
 Identities = 26/90 (28%), Positives = 40/90 (44%)
 Frame = +1

Query: 103 KLYKIDASPPARAAMMAFDILNLPVEMVDVNLLEKEHLKPEFLKKNPVHTVPVLEHGDLI 282
           KLY     P A+ A +A        E ++ N   K    PE+L  NP   VPV+ H    
Sbjct: 263 KLYNAWFCPFAQRAWIAMLAKKAEFEYIEQNPYNKT---PEWLAINPNGLVPVIVHNGNA 319

Query: 283 ITDSHAILMYLFDVYGKDDNLYPKDVKKRA 372
           + +S   + ++ + +     + PKD  KRA
Sbjct: 320 VYESSICIEFIDEAFSTPVTILPKDPYKRA 349


>SB_3922| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 236

 Score = 31.9 bits (69), Expect = 0.32
 Identities = 31/89 (34%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
 Frame = +1

Query: 100 LKLYKIDASPPARAAMMAFDILNLPVEMVDVNLLEKEHLKPEFLKKNP--VHTVPVLEHG 273
           L+LY +   P A    +      L  E V+VNL      KPE+ + +P     VP LE  
Sbjct: 30  LRLYSMRFCPFAERPRLVLAAKGLDYECVNVNLKS----KPEWFQTHPDCEGKVPTLETM 85

Query: 274 D-LIITDSHAILMYLFDVYGKDDNLYPKD 357
           D  +I +S  I  +L D Y K   LYP D
Sbjct: 86  DGKLIPESVIICEFLEDYYRKIP-LYPCD 113


>SB_36474| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1608

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 19/61 (31%), Positives = 33/61 (54%)
 Frame = +1

Query: 157 DILNLPVEMVDVNLLEKEHLKPEFLKKNPVHTVPVLEHGDLIITDSHAILMYLFDVYGKD 336
           DI +L + +V  NLLEK+HL P  + +  V T  +++    +     ++LM LF+  G  
Sbjct: 9   DINSLALTVVQ-NLLEKKHLDPNKIGRLEVGTETIIDKSKSV----KSVLMQLFEDSGNT 63

Query: 337 D 339
           +
Sbjct: 64  E 64


>SB_34255| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 85

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +1

Query: 283 ITDSHAILMYLFDVYGKDDNLYPKDVKKRAIVNQRLFFDTAVL 411
           +T  HA +   F  +   +NLYP + K+   V++ L F  AV+
Sbjct: 35  VTHWHAYVGMSFFEHPLAENLYPNETKRLRGVSEGLLFGLAVI 77


>SB_45992| Best HMM Match : HCO3_cotransp (HMM E-Value=0)
          Length = 890

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 8/64 (12%)
 Frame = +1

Query: 304 LMYLFDVYG-------KDDNLYPKDVKKRAIVNQRLFFDTAVLFSRLSNVTYPAFV-HGV 459
           + Y++D++G         +N+  KDV   A+    LFF T  +   + +V +  F+ H +
Sbjct: 557 IKYIYDIFGLYPLTSGTTENVDGKDVSNTALFTTILFFGTFFVAHIIRDVRHSRFLNHTL 616

Query: 460 RTVI 471
           R VI
Sbjct: 617 RRVI 620


>SB_55898| Best HMM Match : Carb_anhydrase (HMM E-Value=3.6)
          Length = 531

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 16/72 (22%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
 Frame = +1

Query: 178 EMVDVNLLEKEHLKPEFLKKNPVHTVP------VLEHGDLIITDSHAILMYLFDVYGKDD 339
           E+++ +L+  + ++P   + +PVH          LE     ++D H +L  +     +  
Sbjct: 447 ELLEASLIRDDKVQPVIRETSPVHLYDRFGKWTPLEKSPRTLSDDHRVLSDMQVFSDQLS 506

Query: 340 NLYPKDVKKRAI 375
           N+  +DVK R +
Sbjct: 507 NVLEEDVKSRVV 518


>SB_14572| Best HMM Match : ANF_receptor (HMM E-Value=6.7e-18)
          Length = 808

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +1

Query: 187 DVNLLEKEHLKPEFLKKNPVHTVPVLEHGDLIITDSHAILMYLFDVYG 330
           D++    EHL+ EFLK N +H +      D   T    +  Y   +YG
Sbjct: 482 DIHRAAVEHLQEEFLKNN-IHRITSEGFRDSPATQMATLKAYKLGMYG 528


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,500,615
Number of Sequences: 59808
Number of extensions: 318939
Number of successful extensions: 642
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)