Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_L16
         (520 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0604 - 35006004-35008580                                         29   1.7  
04_04_0415 + 25038826-25038835,25039333-25039964,25040484-250405...    29   2.2  
12_02_0808 - 23347167-23347205,23347361-23347439,23348555-233487...    28   3.9  
07_03_1780 - 29465873-29466130,29466236-29466335,29466473-294665...    27   9.0  

>03_06_0604 - 35006004-35008580
          Length = 858

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
 Frame = +3

Query: 222 CGYENNIPMVCCPISN-ACKTPDDKPGIC---VGLYNCE-HITYMMLDKTR 359
           CGY    P+  CP  N     P D  G C   + L NC  + T + LD T+
Sbjct: 291 CGYNGTSPVCRCPSENFQLSNPADPRGGCRRKIELQNCPGNSTMLQLDNTQ 341


>04_04_0415 +
           25038826-25038835,25039333-25039964,25040484-25040561,
           25040588-25040833,25041598-25041684,25041860-25042024
          Length = 405

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 18/60 (30%), Positives = 24/60 (40%)
 Frame = +3

Query: 111 RNESGNCVSLYDCEPLLNLFRNKSRTAEDKKLLGDSQCGYENNIPMVCCPISNACKTPDD 290
           R  +GN  S Y CE +L LFR         +++G   C     +P         C  PDD
Sbjct: 145 RELAGNGASAYLCEDVLGLFRKFHYFVRPSRIVGVGTCA----LPEAWIVGVGTCVLPDD 200


>12_02_0808 -
           23347167-23347205,23347361-23347439,23348555-23348718,
           23348838-23349056
          Length = 166

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 17/63 (26%), Positives = 28/63 (44%)
 Frame = +3

Query: 18  INSNKMIIFSTVSYILLISVNLIRAQTCTTPRNESGNCVSLYDCEPLLNLFRNKSRTAED 197
           + S + ++  T  Y+L I+ NL+   +C+     + NC  L  C P    F  K      
Sbjct: 103 MGSRRALVLGTSGYLLFIAANLV--PSCSEHALPTANC-RLPSCRPEAAAFCTKKMRHLT 159

Query: 198 KKL 206
           KK+
Sbjct: 160 KKI 162


>07_03_1780 -
           29465873-29466130,29466236-29466335,29466473-29466559,
           29466682-29467000,29467097-29468567
          Length = 744

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +3

Query: 108 PRNESGNCVSLYDCEPLLNLFRNKSRTAEDKKLLGDSQCGYENNIPMVCC 257
           PRNE GN ++      LL+L  +K   A   +L+  ++ G      MV C
Sbjct: 268 PRNEEGNALTTARARTLLSLLIDKKILAPRDQLIYTTKRGLITGDGMVKC 317


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,529,858
Number of Sequences: 37544
Number of extensions: 237039
Number of successful extensions: 495
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)