Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_L14
         (322 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g44340.1 68416.m04764 sec23/sec24 transport family protein co...    31   0.23 
At5g14540.1 68418.m01704 proline-rich family protein contains pr...    28   1.2  
At4g26750.1 68417.m03854 hydroxyproline-rich glycoprotein family...    27   2.1  
At2g23260.1 68415.m02778 UDP-glucoronosyl/UDP-glucosyl transfera...    27   2.1  
At1g14700.1 68414.m01757 purple acid phosphatase, putative conta...    27   2.8  
At4g24150.1 68417.m03465 expressed protein ; expression supporte...    26   4.9  
At1g05460.1 68414.m00555 RNA helicase SDE3 (SDE3) identical to R...    26   4.9  
At5g59460.1 68418.m07452 scarecrow-like transcription factor 11 ...    26   6.5  
At5g45520.1 68418.m05591 hypothetical protein                          26   6.5  
At4g15393.1 68417.m02352 cytochrome P450 family protein similar ...    26   6.5  
At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibit...    26   6.5  
At5g16570.1 68418.m01939 glutamine synthetase, putative similar ...    25   8.6  
At5g07400.1 68418.m00847 forkhead-associated domain-containing p...    25   8.6  
At1g58440.1 68414.m06648 squalene monooxygenase, putative / squa...    25   8.6  

>At3g44340.1 68416.m04764 sec23/sec24 transport family protein
           contains Pfam domains PF04811: Sec23/Sec24 trunk domain,
           PF04815: Sec23/Sec24 helical domain and PF04810:
           Sec23/Sec24 zinc finger
          Length = 1096

 Score = 30.7 bits (66), Expect = 0.23
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +1

Query: 139 VIANPDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRYDNPLARGG 288
           ++A P P+   P+ GP     P+S+ PA       N+P   Y  P   GG
Sbjct: 245 MMAPPPPYGQPPNAGPFTGNSPLSSPPAHSIPPPTNFPGVPYGRPPMPGG 294


>At5g14540.1 68418.m01704 proline-rich family protein contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 547

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = +1

Query: 151 PDPFFSQPSNGPSG--NYEPISTGPAFVDFNHPNYPPKRYDNPLAR 282
           P P  S P N P    ++ P  + P+   +N P  PP  YD P  R
Sbjct: 357 PYPQQSYPPNPPRQPPSHPPPGSAPSQQYYNAPPTPPSMYDGPGGR 402


>At4g26750.1 68417.m03854 hydroxyproline-rich glycoprotein family
           protein
          Length = 421

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +1

Query: 172 PSNGPSGNYEPISTGPAFVDFNHP-NYPPKRYDNP 273
           PS+ PS ++ P  TGP+   + HP ++ P   D P
Sbjct: 236 PSSYPSNDHLPPPTGPSDSPYPHPYSHQPYHQDPP 270



 Score = 25.8 bits (54), Expect = 6.5
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +1

Query: 148 NPDPFFSQPSNGPSGNYEPISTGP 219
           NP+P++S P + P+ +    S+ P
Sbjct: 316 NPEPYYSSPHSAPAPSSTSFSSAP 339


>At2g23260.1 68415.m02778 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 456

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 11  SDTIRQ*KLSCFSSSPYWPWLP 76
           S  I + + SC  SSP+ PW+P
Sbjct: 96  SKIIEEKRYSCIISSPFTPWVP 117


>At1g14700.1 68414.m01757 purple acid phosphatase, putative contains
           Pfam profile: PF00149 calcineurin-like phosphoesterase;
           similar to purple acid phosphatase (GI:20257479)
           [Arabidopsis thaliana]
          Length = 366

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = -2

Query: 117 RWNTTIVHHVNSVCGSHGQYGEEEKH 40
           +W   I HH     G HG   E EKH
Sbjct: 239 KWKIVIGHHTIKSAGHHGNTIELEKH 264


>At4g24150.1 68417.m03465 expressed protein ; expression supported
           by MPSS
          Length = 493

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = +1

Query: 79  NRVHVVDNSGVPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAF 225
           N+ +   +SG+ +   S    +   DPFFS  S+G          G AF
Sbjct: 102 NQAYTSSHSGMFTPAGSGSAAVTVADPFFSLSSSGEMRRSMNEDAGAAF 150


>At1g05460.1 68414.m00555 RNA helicase SDE3 (SDE3) identical to RNA
           helicase SDE3 [Arabidopsis thaliana] GI:13811296
          Length = 1002

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 14/47 (29%), Positives = 17/47 (36%)
 Frame = +1

Query: 103 SGVPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAFVDFNHP 243
           SG  SD     +       F    ++G SG Y P   GP  V    P
Sbjct: 4   SGYKSDDEYSVIADKGEIGFIDYQNDGSSGCYNPFDEGPVVVSVPFP 50


>At5g59460.1 68418.m07452 scarecrow-like transcription factor 11
           (SCL11) identical to cDNA scarecrow-like 11 (SCL11)
           mRNA, partial cds gi:4580526
          Length = 172

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
 Frame = +1

Query: 100 NSGVPSDGNSD--HVVIANPDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRYDNP 273
           N G PS  +S+      + P+    +PS    G+ +   +     + N PN  P+ +D P
Sbjct: 82  NGGNPSSSSSNGGKKSFSEPESSKVEPSGETDGDLKRKQSEVVSEEQNRPNKSPRSFDKP 141


>At5g45520.1 68418.m05591 hypothetical protein
          Length = 1167

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 322 FKIANLYETFTSHHGREGCRIAW 254
           FK+ +L E+ T   G E  +IAW
Sbjct: 525 FKVESLMESLTGLQGLESLKIAW 547


>At4g15393.1 68417.m02352 cytochrome P450 family protein similar to
           Cytochrome P450 90C1 (ROTUNDIFOLIA3) (SP:Q9M066)
           [Arabidopsis thaliana]; contains Pfam PF00067:
           Cytochrome P450
          Length = 399

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +1

Query: 190 GNYEPISTGPAFVDFNHPNYPPKRYDNPLA 279
           G+Y  I  G  F+ + + ++ P++YD+PLA
Sbjct: 363 GDYT-IPAGWIFMGYPYVHFNPEKYDDPLA 391


>At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibitor
           family protein low similarity to extensin [Volvox
           carteri] GI:21992
          Length = 312

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +1

Query: 148 NPDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPP 255
           +P P  S PS+ P  +  P S  P  +  + P  PP
Sbjct: 37  SPSPPSSSPSSAPPSSLSPSSPPPLSLSPSSPPPPP 72



 Score = 25.8 bits (54), Expect = 6.5
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +1

Query: 148 NPDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPP 255
           +P P  S PS+ P  +  P S  P  +  + P  PP
Sbjct: 86  SPSPPSSSPSSAPPSSLSPSSPPPLSLSPSSPPPPP 121


>At5g16570.1 68418.m01939 glutamine synthetase, putative similar to
           glutamine synthetase, cytosolic isozyme (glutamate--
           ammonia ligase) [Alfalfa] SWISS-PROT:P04078
          Length = 356

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +1

Query: 151 PDPFFSQPSNGPSGNYEPISTGPAFVDFNHP-NYPPKRYDNPLARG 285
           P P  + PS  P  NY+  STG A  D +    YP   + +P  RG
Sbjct: 41  PGPV-TDPSQLPKWNYDGSSTGQAPGDDSEVIIYPQAIFKDPFRRG 85


>At5g07400.1 68418.m00847 forkhead-associated domain-containing
           protein / FHA domain-containing protein 
          Length = 1084

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1

Query: 100 NSGVPSDGNSDHVVIANPD 156
           N+ VP+D N+  V++ NPD
Sbjct: 661 NTNVPADPNAVRVLVPNPD 679


>At1g58440.1 68414.m06648 squalene monooxygenase, putative /
           squalene epoxidase, putative similar to SP|O65404 (SE
           1,1), SP|O65402 (SE 1,2) 6566341 dbj AB008021.1 AB008021
          Length = 531

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 91  VVDNSGVPSDGNSDHVVIANPDPFFSQP 174
           V++N  +P   N  HVV+A+P P    P
Sbjct: 244 VLENCNLPY-ANHGHVVLADPSPILMYP 270


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,324,617
Number of Sequences: 28952
Number of extensions: 144587
Number of successful extensions: 450
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 450
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 350523880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)