Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_L13
         (581 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53562| Best HMM Match : Exo_endo_phos (HMM E-Value=0.018)           33   0.22 
SB_30630| Best HMM Match : Hydrolase (HMM E-Value=2.5e-05)             32   0.30 
SB_31382| Best HMM Match : RVT_1 (HMM E-Value=2.2e-12)                 31   0.69 
SB_3946| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.69 
SB_16447| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.2  
SB_56517| Best HMM Match : CUB (HMM E-Value=0.0011)                    28   4.8  
SB_39840| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.8  
SB_30489| Best HMM Match : HEAT (HMM E-Value=9.2e-17)                  27   8.5  

>SB_53562| Best HMM Match : Exo_endo_phos (HMM E-Value=0.018)
          Length = 721

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 15/59 (25%), Positives = 28/59 (47%)
 Frame = +1

Query: 208 LHMNYPYWMTDEVYGLNKERQGEILMYANSQLLARLRMERLSHKMCDIKMFMWNEPVKN 384
           +H N   WMT ++ G   +RQG ++ +     L +L  +++   +   K   +   VKN
Sbjct: 351 VHTNDKPWMTQKIKGWIAKRQGALVKHGKESPLFKLWRDKVGKAIASAKHVFYRTKVKN 409


>SB_30630| Best HMM Match : Hydrolase (HMM E-Value=2.5e-05)
          Length = 839

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +1

Query: 331 SHKMCDIKMFMWNEPVKNGYWPKI-RLPNGDEMPVRQNNFVP 453
           +HK   IK+    E V+N ++ K  R PNG+++     NFVP
Sbjct: 91  THKKVHIKLVTEMESVRNRWFDKFGRYPNGEDIDRMYKNFVP 132


>SB_31382| Best HMM Match : RVT_1 (HMM E-Value=2.2e-12)
          Length = 1799

 Score = 31.1 bits (67), Expect = 0.69
 Identities = 15/59 (25%), Positives = 27/59 (45%)
 Frame = +1

Query: 208 LHMNYPYWMTDEVYGLNKERQGEILMYANSQLLARLRMERLSHKMCDIKMFMWNEPVKN 384
           +H N   WMT ++ G   +RQG ++       L +L  +++   +   K   +   VKN
Sbjct: 299 VHTNDKPWMTQKIKGWIAKRQGALVKQGKESPLFKLWRDQVGKAIASAKHVFYRTKVKN 357


>SB_3946| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 870

 Score = 31.1 bits (67), Expect = 0.69
 Identities = 15/59 (25%), Positives = 27/59 (45%)
 Frame = +1

Query: 208 LHMNYPYWMTDEVYGLNKERQGEILMYANSQLLARLRMERLSHKMCDIKMFMWNEPVKN 384
           +H N   WMT ++ G   +RQG ++       L +L  +++   +   K   +   VKN
Sbjct: 337 VHTNDKPWMTQKIKGWIAKRQGALVKQGKESPLFKLWRDQVGKAIASAKHVFYRTKVKN 395


>SB_16447| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 949

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/59 (25%), Positives = 27/59 (45%)
 Frame = +1

Query: 208 LHMNYPYWMTDEVYGLNKERQGEILMYANSQLLARLRMERLSHKMCDIKMFMWNEPVKN 384
           +H N   WMT ++ G   +RQG ++ +     L +L   ++   +   K   +   VKN
Sbjct: 314 VHTNDKPWMTQKIKGWIAKRQGALVKHGKESPLFKLWRYKVGKAIARAKHVFYRTKVKN 372


>SB_56517| Best HMM Match : CUB (HMM E-Value=0.0011)
          Length = 734

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 1/96 (1%)
 Frame = -3

Query: 321 HS*SS*KLTIRVHEYLSLTLFVQT-VHFVSHPIRIIHMKVIHVSVKIDVFCEVRILVVFR 145
           H+ S  +  I  H +    LF +T +H  SHP  ++  + I  +  I        L+  R
Sbjct: 252 HTLSFTRTLIHTHSHSHALLFTRTLIHTHSHPHSLLFTRTIIHTTLIHTHSYSHALLFTR 311

Query: 144 *RAAHSFTPVDDNHTLISNFYPVIVHKHRVGGSFSH 37
               H+ +     H+L+  F  +  H H    SF+H
Sbjct: 312 -TLIHTHS---HPHSLLFTFTIIRTHSHSHALSFTH 343


>SB_39840| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 97

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 190 NTYMYYLHMNYPYWMTDEVYGLNKERQGE 276
           NT  YY+H+NY  + +D  Y +     G+
Sbjct: 66  NTSSYYIHLNYKDYESDYFYTIGSYNSGD 94


>SB_30489| Best HMM Match : HEAT (HMM E-Value=9.2e-17)
          Length = 722

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 21  SLHDEDD*SCHRPCAYEL 74
           ++HD+DD  C R CA+ L
Sbjct: 117 TIHDDDDAECRRCCAFNL 134


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,275,401
Number of Sequences: 59808
Number of extensions: 310967
Number of successful extensions: 759
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1397989795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)