Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_L13
         (581 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g17180.1 68416.m02191 serine carboxypeptidase S10 family prot...    31   0.42 
At5g15830.1 68418.m01852 bZIP transcription factor family protei...    28   4.0  
At2g06820.1 68415.m00761 expressed protein low similarity to zin...    27   6.9  
At1g04600.1 68414.m00454 myosin, putative similar to myosin (GI:...    27   6.9  
At5g33210.1 68418.m03923 zinc finger protein-related similar to ...    27   9.1  
At4g28715.1 68417.m04107 myosin heavy chain, putative similar to...    27   9.1  
At3g51060.1 68416.m05591 zinc finger protein, putative / lateral...    27   9.1  

>At3g17180.1 68416.m02191 serine carboxypeptidase S10 family protein
           similar to serine carboxypeptidase II SP:P08819
           [Triticum aestivum] (Carlsberg Res. Commun.
           52:297-311(1987))
          Length = 478

 Score = 31.5 bits (68), Expect = 0.42
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
 Frame = +1

Query: 70  NYYGIKVTDKSMVVIDWRKGVRRSLSEDDKYSYFTED----VDLNTYMYYLHMNYPYW 231
           +Y G  V DKS  V DW K VR     D  YS + E+    VD+   ++    N   W
Sbjct: 301 SYLGFGVNDKSPAVKDWFKRVRWFEGYDPCYSNYAEEYFNRVDVRLSLHATTRNVARW 358


>At5g15830.1 68418.m01852 bZIP transcription factor family protein
           similar to common plant regulatory factor 7 GI:9650828
           from [Petroselinum crispum]; contains Pfam profile:
           PF00170 bZIP transcription factor
          Length = 186

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 17/92 (18%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
 Frame = +1

Query: 235 TDEVYGLNKERQGEILMYANSQLLARLRMERLSHKMCDIKMFMWNEPVKNGYWPKI-RLP 411
           T+E++ +N+ +Q    M +N +   R RM +  H    +    W     +    K+ ++ 
Sbjct: 65  TEEIFVINERKQRR--MVSNRESARRSRMRKQRHLDELLSQVAWLRSENHQLLDKLNQVS 122

Query: 412 NGDEMPVRQNNFVPVTSENLKLKMLLDDVEQM 507
           + +++ +++N+   +  ENL+L+ ++  ++++
Sbjct: 123 DNNDLVIQENS--SLKEENLELRQVITSMKKL 152


>At2g06820.1 68415.m00761 expressed protein low similarity to zinc
           finger protein [Arabidopsis thaliana] GI:976277
          Length = 267

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 10/24 (41%), Positives = 20/24 (83%)
 Frame = +1

Query: 454 VTSENLKLKMLLDDVEQMIREGIL 525
           +TS ++K+K+LLD ++ +I+E I+
Sbjct: 151 ITSSSVKIKVLLDGLQPLIKETIV 174


>At1g04600.1 68414.m00454 myosin, putative similar to myosin
            (GI:499047) [Arabidopsis thaliana]
          Length = 1730

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +1

Query: 418  DEMPV-RQNNFVPVTSENLKLKMLLDDVEQMIRE 516
            DE+PV  Q+  + + +EN KLK L+  +E+ I E
Sbjct: 1037 DEVPVIDQSAIIKLETENQKLKALVSSMEEKIDE 1070


>At5g33210.1 68418.m03923 zinc finger protein-related similar to
           lateral root primordium 1 (LRP1) [Arabidopsis thaliana]
           GI:882341; contains Pfam profile PF05142: Domain of
           unknown function (DUF702),  TIGR01623: putative zinc
           finger domain, LRP1 type
          Length = 173

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 394 PKIRLPNGDEMPVRQNNFVPVTSENL 471
           P+ +LP G+ +P R    +P TS +L
Sbjct: 105 PQTQLPRGESVPKRHRENLPATSSSL 130


>At4g28715.1 68417.m04107 myosin heavy chain, putative similar to
           myosin [Arabidopsis thaliana] gi|499047|emb|CAA84066
          Length = 639

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +1

Query: 406 LPNGDEMPVRQNNFVP-VTSENLKLKMLLDDVEQMIRE 516
           +P   E+PV     V  +TSEN KLK L+  ++Q I E
Sbjct: 87  VPVLQEVPVVDTELVEKLTSENEKLKSLVSSLDQKIDE 124


>At3g51060.1 68416.m05591 zinc finger protein, putative / lateral
           root primordium (LRP) protein-related similar to lateral
           root primordium 1 (LRP1) [Arabidopsis thaliana]
           GI:882341; contains Pfam profile PF05142: Domain of
           unknown function (DUF702)
          Length = 252

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 394 PKIRLPNGDEMPVRQNNFVPVTSENL 471
           P+ +LP G+ +P R    +P TS +L
Sbjct: 197 PQTQLPRGESVPKRHRENLPATSSSL 222


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,339,188
Number of Sequences: 28952
Number of extensions: 219645
Number of successful extensions: 573
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1141585696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)