Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_L12
         (532 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      28   0.76 
SPBC30B4.08 |eri1||double-strand siRNA ribonuclease|Schizosaccha...    28   1.00 
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    26   3.0  
SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces pomb...    25   5.3  
SPAC1782.02c |||conserved fungal protein|Schizosaccharomyces pom...    25   5.3  
SPAC30C2.06c |dml1||mitochondrial genome maintenance protein |Sc...    25   7.0  
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    25   9.3  
SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein Tea4|Schi...    25   9.3  
SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces ...    25   9.3  

>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 28.3 bits (60), Expect = 0.76
 Identities = 11/45 (24%), Positives = 27/45 (60%)
 Frame = -3

Query: 227 DSIYIRLNSMKTFYYNITIQSLAFIINGFIYLWKLSLTGSEFRGL 93
           +S++ RL  + +F++ +    +   ++ F++L+  +L  S+FR L
Sbjct: 15  ESLFFRLFFVCSFFFPLLYSFIFATLHAFVFLFSHTLVSSQFRRL 59


>SPBC30B4.08 |eri1||double-strand siRNA
           ribonuclease|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 27.9 bits (59), Expect = 1.00
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 152 INGFIYLWKLSLTGSEFRGLFSACSINR 69
           ING +  W L   GSE RG+  A +++R
Sbjct: 248 INGMLEHWGLQFEGSEHRGIDDARNLSR 275


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1822

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +1

Query: 61   VYERLMEQALKSPLNSEP-VNESFHKYIKPLM 153
            VY  L    +K  L+S+P VNE+F KY+ P++
Sbjct: 1376 VYSSLSTM-IKEGLSSKPSVNETFSKYVFPVL 1406


>SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 394

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +1

Query: 316 YKESSINHVSVIILSNSHPPPL 381
           YK S   HVS  +L NS  PPL
Sbjct: 361 YKSSFSAHVSSEVLRNSKSPPL 382


>SPAC1782.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 161

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = -3

Query: 209 LNSMKTFYYNIT-IQSLA-FIINGFIYLWKLSLTGSEFRGLFSACSI 75
           L S   F+  IT I+++  FI+ GFIYL K  +  +     F+ C +
Sbjct: 77  LQSNFLFFSGITPIRAIFDFILTGFIYLKKEHIASNSLTFTFAFCDL 123


>SPAC30C2.06c |dml1||mitochondrial genome maintenance protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 465

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -2

Query: 525 VRDFDSELPGKNFQIFQNFRTKLKHYAKKTW 433
           ++D +S+L  +      N   K K+Y+ K W
Sbjct: 316 MKDIESKLQSEGRGFIHNLNFKAKNYSSKEW 346


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1142

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -2

Query: 471  FRTKLKHYAKKTWD 430
            F TK  HY KK WD
Sbjct: 986  FCTKSSHYRKKLWD 999


>SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein
           Tea4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -1

Query: 115 PAPSLEDFLALVPSIVHKHDRRMRPRSNT 29
           P P L D  + +PS    HD  + PR NT
Sbjct: 647 PTPEL-DASSAIPSSSISHDEDLLPRKNT 674


>SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 486

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +1

Query: 421 LSDIPCFFSIVF*FCSEILKNLKILTWQL*VKVTH 525
           ++ I C + +    C +++ +L+ L +   VKVTH
Sbjct: 317 MTKIDCQYPVAIQECPDLIMSLRFLRFLQLVKVTH 351


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,038,515
Number of Sequences: 5004
Number of extensions: 38192
Number of successful extensions: 93
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)