Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_L12
         (532 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0023 + 227014-227166,227893-228001,228096-228157,228284-22...    54   9e-08
03_01_0309 - 2432395-2433271,2433494-2434495,2434538-2435073,243...    32   0.33 
04_04_1323 + 32644956-32645096,32645488-32646126,32646701-326469...    27   7.1  
06_01_0319 - 2292071-2292208,2292342-2292418,2292758-2293321,229...    27   9.4  
01_05_0168 - 18865821-18866843                                         27   9.4  

>06_01_0023 +
           227014-227166,227893-228001,228096-228157,228284-228493,
           228609-228696,228774-228936,229037-229235,229456-229653,
           229887-230018,230182-230302,230453-230563,230710-230779,
           230880-231063,231137-231346
          Length = 669

 Score = 53.6 bits (123), Expect = 9e-08
 Identities = 23/51 (45%), Positives = 32/51 (62%)
 Frame = +1

Query: 1   DGFDITDEVLCSTLGAYDGRVYERLMEQALKSPLNSEPVNESFHKYIKPLM 153
           D F+ TD  L S LG YDG VY  L E+A K PLN   V + + ++++PL+
Sbjct: 610 DAFNYTDHYLGSVLGRYDGNVYPALYEEAWKDPLNDTDVPDGYQEHLRPLL 660


>03_01_0309 -
           2432395-2433271,2433494-2434495,2434538-2435073,
           2435579-2435716,2436050-2436148,2436278-2436346,
           2436968-2437063
          Length = 938

 Score = 31.9 bits (69), Expect = 0.33
 Identities = 15/43 (34%), Positives = 26/43 (60%)
 Frame = +1

Query: 16  TDEVLCSTLGAYDGRVYERLMEQALKSPLNSEPVNESFHKYIK 144
           ++E +CS +   +GR+ ++L+E  L+ PL  EP   S   Y+K
Sbjct: 812 SEEQICSLVS--EGRMLKKLVESCLEIPLVPEPEKVSITNYVK 852


>04_04_1323 +
           32644956-32645096,32645488-32646126,32646701-32646907,
           32647020-32647100,32647686-32648566,32648641-32648932,
           32649657-32650673,32651334-32651605,32651992-32652493
          Length = 1343

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 18/44 (40%), Positives = 25/44 (56%)
 Frame = +1

Query: 10  DITDEVLCSTLGAYDGRVYERLMEQALKSPLNSEPVNESFHKYI 141
           D+  E+L   L A+  R  ERLM +AL+  LNSE   + F  Y+
Sbjct: 542 DLAGELLGRELRAHI-RHAERLMVKALQRDLNSERELQEFDHYL 584


>06_01_0319 -
           2292071-2292208,2292342-2292418,2292758-2293321,
           2293978-2294104,2294207-2294323,2294440-2294547,
           2296567-2296804,2296915-2297122,2297199-2297247,
           2297384-2297728
          Length = 656

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = -3

Query: 221 IYIRLNSMKTFYYNITIQSLAFIINGFI--YLWKLSLTG 111
           +Y++L    TF+  +   SL F+  GFI  +L K +LTG
Sbjct: 178 LYLQLAFTSTFFAGVFQASLGFLRLGFIVDFLSKATLTG 216


>01_05_0168 - 18865821-18866843
          Length = 340

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = -3

Query: 149 NGFIYLWKLSLTGSEFRGLFSAC 81
           N F YLWK    G  +  LF  C
Sbjct: 289 NAFYYLWKQFDAGGSYNALFKKC 311


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,002,890
Number of Sequences: 37544
Number of extensions: 206753
Number of successful extensions: 399
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 399
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)