Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_L12
         (532 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g35690.1 68415.m04377 acyl-CoA oxidase, putative strong simil...    63   1e-10
At4g16760.1 68417.m02531 acyl-CoA oxidase (ACX1) identical to ac...    50   1e-06
At1g74680.1 68414.m08648 exostosin family protein contains Pfam ...    27   6.0  

>At2g35690.1 68415.m04377 acyl-CoA oxidase, putative strong
           similarity to acyl-CoA oxidase [Arabidopsis thaliana]
           GI:3044214
          Length = 664

 Score = 62.9 bits (146), Expect = 1e-10
 Identities = 27/51 (52%), Positives = 35/51 (68%)
 Frame = +1

Query: 1   DGFDITDEVLCSTLGAYDGRVYERLMEQALKSPLNSEPVNESFHKYIKPLM 153
           D FD TD+ L S LG YDG VY +L E+ALK PLN   V + + +YI+PL+
Sbjct: 605 DAFDYTDQYLGSVLGRYDGNVYPKLFEEALKDPLNDSVVPDGYREYIRPLI 655


>At4g16760.1 68417.m02531 acyl-CoA oxidase (ACX1) identical to
           acyl-CoA oxidase [Arabidopsis thaliana] GI:3044214
          Length = 675

 Score = 49.6 bits (113), Expect = 1e-06
 Identities = 22/43 (51%), Positives = 27/43 (62%)
 Frame = +1

Query: 1   DGFDITDEVLCSTLGAYDGRVYERLMEQALKSPLNSEPVNESF 129
           D F+ TD  L S LG YDG VY +L E+ALK PLN   V + +
Sbjct: 605 DAFNYTDHYLNSVLGRYDGNVYPKLFEEALKDPLNDSVVPDGY 647


>At1g74680.1 68414.m08648 exostosin family protein contains Pfam
           profile: PF03016 Exostosin family
          Length = 461

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -3

Query: 209 LNSMKTFYYNITIQSLAFIINGFIYLWK--LSLTGSEFRGL 93
           L S K  +Y IT+ +L FI++  ++L +   S T S  R L
Sbjct: 9   LLSSKFLFYTITVSTLLFIVSSLVFLQRHDSSFTSSLVRKL 49


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,168,849
Number of Sequences: 28952
Number of extensions: 182360
Number of successful extensions: 411
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 411
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 987020800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)