Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_L11
(392 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_35451| Best HMM Match : Ribosomal_L36e (HMM E-Value=0) 119 1e-27
SB_13913| Best HMM Match : WH2 (HMM E-Value=8.8e-05) 31 0.33
SB_31885| Best HMM Match : RVT_1 (HMM E-Value=4.6e-28) 29 1.3
SB_6230| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_24| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_45611| Best HMM Match : p450 (HMM E-Value=0) 28 2.3
SB_27155| Best HMM Match : Dynein_heavy (HMM E-Value=1.1e-09) 28 2.3
SB_59142| Best HMM Match : RVT_1 (HMM E-Value=2.5e-09) 28 3.1
SB_53136| Best HMM Match : RVT_1 (HMM E-Value=4.6e-28) 28 3.1
SB_47530| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.1
SB_26304| Best HMM Match : RVT_1 (HMM E-Value=2.3e-27) 28 3.1
SB_26129| Best HMM Match : RVT_1 (HMM E-Value=1.2e-27) 28 3.1
SB_25074| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.1
SB_15856| Best HMM Match : RVT_1 (HMM E-Value=1.3e-27) 28 3.1
SB_6874| Best HMM Match : RnaseH (HMM E-Value=1.6) 28 3.1
SB_5831| Best HMM Match : TolA (HMM E-Value=0.0037) 28 3.1
SB_3691| Best HMM Match : DUF1520 (HMM E-Value=5.7) 28 3.1
SB_58785| Best HMM Match : RnaseH (HMM E-Value=0.37) 28 3.1
SB_51857| Best HMM Match : zf-CCHC (HMM E-Value=0.0048) 28 3.1
SB_37459| Best HMM Match : DUF1520 (HMM E-Value=5.7) 28 3.1
SB_30990| Best HMM Match : RhoGEF (HMM E-Value=2.1) 28 3.1
SB_28694| Best HMM Match : RVT_1 (HMM E-Value=4.6e-28) 28 3.1
SB_28242| Best HMM Match : RVT_1 (HMM E-Value=2.2e-27) 28 3.1
SB_25606| Best HMM Match : RnaseH (HMM E-Value=1.6) 28 3.1
SB_22848| Best HMM Match : RVT_1 (HMM E-Value=5.1e-15) 28 3.1
SB_8019| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.1
SB_7494| Best HMM Match : RVT_1 (HMM E-Value=4.6e-28) 28 3.1
SB_5227| Best HMM Match : RnaseH (HMM E-Value=1.8) 28 3.1
SB_3197| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.1
SB_2983| Best HMM Match : RnaseH (HMM E-Value=1.6) 28 3.1
SB_14664| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.1
SB_11749| Best HMM Match : UPF0254 (HMM E-Value=0.71) 27 5.4
SB_30986| Best HMM Match : 7tm_1 (HMM E-Value=0) 27 7.2
SB_39349| Best HMM Match : 7tm_1 (HMM E-Value=0) 27 7.2
SB_44672| Best HMM Match : ABC_tran (HMM E-Value=4.2039e-44) 26 9.5
SB_8121| Best HMM Match : 7tm_1 (HMM E-Value=5.4e-08) 26 9.5
SB_2480| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.5
SB_786| Best HMM Match : EGF (HMM E-Value=0) 26 9.5
SB_36665| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.5
>SB_35451| Best HMM Match : Ribosomal_L36e (HMM E-Value=0)
Length = 100
Score = 119 bits (286), Expect = 1e-27
Identities = 60/102 (58%), Positives = 73/102 (71%)
Frame = +3
Query: 33 IAIGLRKGHKTTKISAGKKGITDKAIKIRPARLKGIQTKHSKFVRDLVREVVGHAQYEKR 212
+A+GL+KGHK TK K +P+R KG K KFVRD+VREVVG A YEKR
Sbjct: 1 MAVGLQKGHKVTK----------NVTKPKPSRRKGASNKRVKFVRDVVREVVGFAPYEKR 50
Query: 213 AMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLTQMR 338
MELL++ KDKRALKF K+RLGTH+R KRKREE+++VL MR
Sbjct: 51 VMELLRIGKDKRALKFCKKRLGTHVRGKRKREEITSVLAAMR 92
>SB_13913| Best HMM Match : WH2 (HMM E-Value=8.8e-05)
Length = 493
Score = 31.1 bits (67), Expect = 0.33
Identities = 31/101 (30%), Positives = 50/101 (49%), Gaps = 6/101 (5%)
Frame = +3
Query: 12 IMAPRFEIAIGLRKGHKTTKISAGKKGITDKAIKIRPARLKGIQTKHSKF-----VRDLV 176
+ AP+ E + K K K+S K+ + A +R A GI K +K +R+++
Sbjct: 267 LSAPQNEEKVETPKSSKKEKLSELKRRL---ATPMREAIEAGIALKQTKKKLATPLREVI 323
Query: 177 REVVGHAQYEKR-AMELLKVSKDKRALKFLKRRLGTHIRAK 296
+ + +K+ A L K + K ALK K+RL T IRA+
Sbjct: 324 KSKPKLKETKKKLATPLRKEIQSKPALKETKKRLATPIRAE 364
>SB_31885| Best HMM Match : RVT_1 (HMM E-Value=4.6e-28)
Length = 922
Score = 29.1 bits (62), Expect = 1.3
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +3
Query: 96 TDKAIKIRPARLKGIQTKHSKFVRDLVREVVGHAQY-EKRAMELLKVSKDKRAL 254
TDK +K+ PA+++ I S + V+ ++G AQY K +L ++K R L
Sbjct: 659 TDKGLKVDPAKVRAIVDMPSPTDKLGVQRLLGLAQYLAKSCPQLSDITKPLRDL 712
>SB_6230| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 191
Score = 28.7 bits (61), Expect = 1.8
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +3
Query: 132 KGIQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDK 245
+G++ K + ++ E GHA Y+K L KVS+++
Sbjct: 32 RGLRKVSRKHAQRILDETAGHASYKKEHRGLRKVSREQ 69
Score = 28.7 bits (61), Expect = 1.8
Identities = 19/61 (31%), Positives = 29/61 (47%)
Frame = +3
Query: 132 KGIQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREE 311
+G++ K R ++ E GH Y+K L KVS+ K A + L G H K++
Sbjct: 88 RGLRKVSRKHARRILDETAGHNTYKKEHRGLRKVSR-KHAQRILDGTAG-HCSYKKEHRG 145
Query: 312 L 314
L
Sbjct: 146 L 146
Score = 27.9 bits (59), Expect = 3.1
Identities = 16/58 (27%), Positives = 27/58 (46%)
Frame = +3
Query: 132 KGIQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKR 305
+G++ + + ++ E GH Y+K L KVS+ K A + L G + K R
Sbjct: 60 RGLRKVSREQAQRIIDETAGHGSYKKEYRGLRKVSR-KHARRILDETAGHNTYKKEHR 116
Score = 27.5 bits (58), Expect = 4.1
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = +3
Query: 171 LVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNV 323
++ E GH Y+K L KVS+ K A + L G H K++ L V
Sbjct: 17 ILNETAGHGSYKKEHRGLRKVSR-KHAQRILDETAG-HASYKKEHRGLRKV 65
>SB_24| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1246
Score = 28.7 bits (61), Expect = 1.8
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +3
Query: 96 TDKAIKIRPARLKGIQTKHSKFVRDLVREVVGHAQY-EKRAMELLKVSKDKRAL 254
TDK +K+ PA+++ I S + V+ ++G AQY K +L ++K R L
Sbjct: 618 TDKGLKVNPAKVRAIVDMPSPTDKLGVQRLLGLAQYLAKFLPQLSDITKPLRDL 671
>SB_45611| Best HMM Match : p450 (HMM E-Value=0)
Length = 847
Score = 28.3 bits (60), Expect = 2.3
Identities = 16/29 (55%), Positives = 18/29 (62%)
Frame = +3
Query: 234 SKDKRALKFLKRRLGTHIRAKRKREELSN 320
+K RALKFLK RL +R KR E L N
Sbjct: 59 NKSPRALKFLKTRL-QDLRKKRDSETLRN 86
>SB_27155| Best HMM Match : Dynein_heavy (HMM E-Value=1.1e-09)
Length = 1248
Score = 28.3 bits (60), Expect = 2.3
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +3
Query: 117 RPARLKGIQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKR 248
RP +L+ I+ + +VR L + G +Y + L++ SKD R
Sbjct: 625 RPNKLQVIKLSDANYVRTLENSIQGGIEYLRLGDHLVEFSKDFR 668
>SB_59142| Best HMM Match : RVT_1 (HMM E-Value=2.5e-09)
Length = 772
Score = 27.9 bits (59), Expect = 3.1
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +3
Query: 96 TDKAIKIRPARLKGIQTKHSKFVRDLVREVVGHAQY-EKRAMELLKVSKDKRAL 254
TDK +K+ PA+++ I S + V+ ++G AQY K +L ++K R L
Sbjct: 653 TDKGLKVDPAKVRAIVDMPSPTDKLGVQRLLGLAQYLAKFLPQLSDITKPLRDL 706
>SB_53136| Best HMM Match : RVT_1 (HMM E-Value=4.6e-28)
Length = 934
Score = 27.9 bits (59), Expect = 3.1
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +3
Query: 96 TDKAIKIRPARLKGIQTKHSKFVRDLVREVVGHAQY-EKRAMELLKVSKDKRAL 254
TDK +K+ PA+++ I S + V+ ++G AQY K +L ++K R L
Sbjct: 587 TDKGLKVDPAKVRAIVDMPSPTDKLGVQRLLGLAQYLAKFLPQLSDITKPLRDL 640
>SB_47530| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 939
Score = 27.9 bits (59), Expect = 3.1
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = -1
Query: 125 SWPNFNGFVCNTLFASGYLCRFV-AFSQTNCDFKSG 21
S P NG C L AS Y C + F+ TNC +K G
Sbjct: 189 STPCLNGGTCVDLVAS-YRCDCIKGFNGTNCQYKLG 223
>SB_26304| Best HMM Match : RVT_1 (HMM E-Value=2.3e-27)
Length = 372
Score = 27.9 bits (59), Expect = 3.1
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +3
Query: 96 TDKAIKIRPARLKGIQTKHSKFVRDLVREVVGHAQY-EKRAMELLKVSKDKRAL 254
TDK +K+ PA+++ I S + V+ ++G AQY K +L ++K R L
Sbjct: 277 TDKGLKVDPAKVRAIVDMPSPTDKLGVQRLLGLAQYLAKFLPQLSDITKPLRDL 330
>SB_26129| Best HMM Match : RVT_1 (HMM E-Value=1.2e-27)
Length = 1036
Score = 27.9 bits (59), Expect = 3.1
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +3
Query: 96 TDKAIKIRPARLKGIQTKHSKFVRDLVREVVGHAQY-EKRAMELLKVSKDKRAL 254
TDK +K+ PA+++ I S + V+ ++G AQY K +L ++K R L
Sbjct: 659 TDKGLKVDPAKVRAIVDMPSPTDKLGVQRLLGLAQYLAKFLPQLSDITKPLRDL 712
>SB_25074| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 911
Score = 27.9 bits (59), Expect = 3.1
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +3
Query: 96 TDKAIKIRPARLKGIQTKHSKFVRDLVREVVGHAQY-EKRAMELLKVSKDKRAL 254
TDK +K+ PA+++ I S + V+ ++G AQY K +L ++K R L
Sbjct: 576 TDKGLKVDPAKVRAIVDMPSPTDKLGVQRLLGLAQYLAKFLPQLSDITKPLRDL 629
>SB_15856| Best HMM Match : RVT_1 (HMM E-Value=1.3e-27)
Length = 514
Score = 27.9 bits (59), Expect = 3.1
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +3
Query: 96 TDKAIKIRPARLKGIQTKHSKFVRDLVREVVGHAQY-EKRAMELLKVSKDKRAL 254
TDK +K+ PA+++ I S + V+ ++G AQY K +L ++K R L
Sbjct: 258 TDKGLKVDPAKVRAIVDMPSPTDKLGVQRLLGLAQYLAKFLPQLSDITKPLRDL 311
>SB_6874| Best HMM Match : RnaseH (HMM E-Value=1.6)
Length = 349
Score = 27.9 bits (59), Expect = 3.1
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +3
Query: 96 TDKAIKIRPARLKGIQTKHSKFVRDLVREVVGHAQY-EKRAMELLKVSKDKRAL 254
TDK +K+ PA+++ I S + V+ ++G AQY K +L ++K R L
Sbjct: 135 TDKGLKVDPAKVRAIVDMPSPTDKLGVQRLLGLAQYLAKFLPQLSDITKPLRDL 188
>SB_5831| Best HMM Match : TolA (HMM E-Value=0.0037)
Length = 703
Score = 27.9 bits (59), Expect = 3.1
Identities = 20/63 (31%), Positives = 29/63 (46%)
Frame = +2
Query: 188 WARTV*EEGNGIAQSIER*ARP*VLEASPRHTHPREEEA*RAQQRTNTDEEGGRTPSPPR 367
WA + EE + +A ER +LE EEE + ++R +E GR PSP +
Sbjct: 579 WATNMIEEVHAVADQKER-----LLEEEKVRLKEEEEERKKQEERKKA-KEAGRRPSPVK 632
Query: 368 HHS 376
S
Sbjct: 633 RVS 635
>SB_3691| Best HMM Match : DUF1520 (HMM E-Value=5.7)
Length = 219
Score = 27.9 bits (59), Expect = 3.1
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +3
Query: 96 TDKAIKIRPARLKGIQTKHSKFVRDLVREVVGHAQY-EKRAMELLKVSKDKRAL 254
TDK +K+ PA+++ I S + V+ ++G AQY K +L ++K R L
Sbjct: 72 TDKGLKVDPAKVRAIVDMPSPTDKLGVQRLLGLAQYLAKFLPQLSDITKPLRDL 125
>SB_58785| Best HMM Match : RnaseH (HMM E-Value=0.37)
Length = 279
Score = 27.9 bits (59), Expect = 3.1
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +3
Query: 96 TDKAIKIRPARLKGIQTKHSKFVRDLVREVVGHAQY-EKRAMELLKVSKDKRAL 254
TDK +K+ PA+++ I S + V+ ++G AQY K +L ++K R L
Sbjct: 16 TDKGLKVDPAKVRAIVDMPSPTDKLGVQRLLGLAQYLAKFLPQLSDITKPLRDL 69
>SB_51857| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)
Length = 438
Score = 27.9 bits (59), Expect = 3.1
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +3
Query: 96 TDKAIKIRPARLKGIQTKHSKFVRDLVREVVGHAQY-EKRAMELLKVSKDKRAL 254
TDK +K+ PA+++ I S + V+ ++G AQY K +L ++K R L
Sbjct: 334 TDKGLKVDPAKVRAIVDMPSPTDKLGVQRLLGLAQYLAKFLPQLSDITKPLRDL 387
>SB_37459| Best HMM Match : DUF1520 (HMM E-Value=5.7)
Length = 219
Score = 27.9 bits (59), Expect = 3.1
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +3
Query: 96 TDKAIKIRPARLKGIQTKHSKFVRDLVREVVGHAQY-EKRAMELLKVSKDKRAL 254
TDK +K+ PA+++ I S + V+ ++G AQY K +L ++K R L
Sbjct: 72 TDKGLKVDPAKVRAIVDMPSPTDKLGVQRLLGLAQYLAKFLPQLSDITKPLRDL 125
>SB_30990| Best HMM Match : RhoGEF (HMM E-Value=2.1)
Length = 261
Score = 27.9 bits (59), Expect = 3.1
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +3
Query: 96 TDKAIKIRPARLKGIQTKHSKFVRDLVREVVGHAQY-EKRAMELLKVSKDKRAL 254
TDK +K+ PA+++ I S + V+ ++G AQY K +L ++K R L
Sbjct: 16 TDKGLKVDPAKVRAIVDMPSPTDKLGVQRLLGLAQYLAKFLPQLSDITKPLRDL 69
>SB_28694| Best HMM Match : RVT_1 (HMM E-Value=4.6e-28)
Length = 1045
Score = 27.9 bits (59), Expect = 3.1
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +3
Query: 96 TDKAIKIRPARLKGIQTKHSKFVRDLVREVVGHAQY-EKRAMELLKVSKDKRAL 254
TDK +K+ PA+++ I S + V+ ++G AQY K +L ++K R L
Sbjct: 620 TDKGLKVDPAKVRAIVDMPSPTDKLGVQRLLGLAQYLAKFLPQLSDITKPLRDL 673
>SB_28242| Best HMM Match : RVT_1 (HMM E-Value=2.2e-27)
Length = 381
Score = 27.9 bits (59), Expect = 3.1
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +3
Query: 96 TDKAIKIRPARLKGIQTKHSKFVRDLVREVVGHAQY-EKRAMELLKVSKDKRAL 254
TDK +K+ PA+++ I S + V+ ++G AQY K +L ++K R L
Sbjct: 277 TDKGLKVDPAKVRAIVDMPSPTDKLGVQRLLGLAQYLAKFLPQLSDITKPLRDL 330
>SB_25606| Best HMM Match : RnaseH (HMM E-Value=1.6)
Length = 343
Score = 27.9 bits (59), Expect = 3.1
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +3
Query: 96 TDKAIKIRPARLKGIQTKHSKFVRDLVREVVGHAQY-EKRAMELLKVSKDKRAL 254
TDK +K+ PA+++ I S + V+ ++G AQY K +L ++K R L
Sbjct: 109 TDKGLKVDPAKVRAIVDMPSPTDKLGVQRLLGLAQYLAKFLPQLSDITKPLRDL 162
>SB_22848| Best HMM Match : RVT_1 (HMM E-Value=5.1e-15)
Length = 630
Score = 27.9 bits (59), Expect = 3.1
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +3
Query: 96 TDKAIKIRPARLKGIQTKHSKFVRDLVREVVGHAQY-EKRAMELLKVSKDKRAL 254
TDK +K+ PA+++ I S + V+ ++G AQY K +L ++K R L
Sbjct: 169 TDKGLKVDPAKVRAIVDMPSPTDKLGVQRLLGLAQYLAKFLPQLSDITKPLRDL 222
>SB_8019| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 671
Score = 27.9 bits (59), Expect = 3.1
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +3
Query: 96 TDKAIKIRPARLKGIQTKHSKFVRDLVREVVGHAQY-EKRAMELLKVSKDKRAL 254
TDK +K+ PA+++ I S + V+ ++G AQY K +L ++K R L
Sbjct: 16 TDKGLKVDPAKVRAIVDMPSPTDKLGVQRLLGLAQYLAKFLPQLSDITKPLRDL 69
>SB_7494| Best HMM Match : RVT_1 (HMM E-Value=4.6e-28)
Length = 960
Score = 27.9 bits (59), Expect = 3.1
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +3
Query: 96 TDKAIKIRPARLKGIQTKHSKFVRDLVREVVGHAQY-EKRAMELLKVSKDKRAL 254
TDK +K+ PA+++ I S + V+ ++G AQY K +L ++K R L
Sbjct: 560 TDKGLKVDPAKVRAIVDMPSPTDKLGVQRLLGLAQYLAKFLPQLSDITKPLRDL 613
>SB_5227| Best HMM Match : RnaseH (HMM E-Value=1.8)
Length = 334
Score = 27.9 bits (59), Expect = 3.1
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +3
Query: 96 TDKAIKIRPARLKGIQTKHSKFVRDLVREVVGHAQY-EKRAMELLKVSKDKRAL 254
TDK +K+ PA+++ I S + V+ ++G AQY K +L ++K R L
Sbjct: 16 TDKGLKVDPAKVRAIVDMPSPTDKLGVQRLLGLAQYLAKFLPQLSDITKPLRDL 69
>SB_3197| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 652
Score = 27.9 bits (59), Expect = 3.1
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +3
Query: 96 TDKAIKIRPARLKGIQTKHSKFVRDLVREVVGHAQY-EKRAMELLKVSKDKRAL 254
TDK +K+ PA+++ I S + V+ ++G AQY K +L ++K R L
Sbjct: 595 TDKGLKVDPAKVRAIVDMPSPTDKLGVQRLLGLAQYLAKFLPQLSDITKPLRDL 648
>SB_2983| Best HMM Match : RnaseH (HMM E-Value=1.6)
Length = 279
Score = 27.9 bits (59), Expect = 3.1
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +3
Query: 96 TDKAIKIRPARLKGIQTKHSKFVRDLVREVVGHAQY-EKRAMELLKVSKDKRAL 254
TDK +K+ PA+++ I S + V+ ++G AQY K +L ++K R L
Sbjct: 16 TDKGLKVDPAKVRAIVDMPSPTDKLGVQRLLGLAQYLAKFLPQLSDITKPLRDL 69
>SB_14664| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 61
Score = 27.5 bits (58), Expect = 4.1
Identities = 12/45 (26%), Positives = 27/45 (60%)
Frame = +3
Query: 177 REVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREE 311
RE+ + + + E++K+ K K++ K +K++ + K+K+EE
Sbjct: 3 REINQKDKKQIKKEEIIKIKKKKKSKKKIKKKKKKKKKKKKKKEE 47
>SB_11749| Best HMM Match : UPF0254 (HMM E-Value=0.71)
Length = 405
Score = 27.1 bits (57), Expect = 5.4
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = -2
Query: 328 VSTLLSSSRFLFARMCVPRRRFKNLRARLSFDTLS 224
+ST L++SRFL RR KNLR L TL+
Sbjct: 269 LSTSLATSRFLLPPPLFSFRRDKNLRTSLVRSTLT 303
>SB_30986| Best HMM Match : 7tm_1 (HMM E-Value=0)
Length = 2682
Score = 26.6 bits (56), Expect = 7.2
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -2
Query: 133 FSLAGLILMALSVIPFLPADIFVVLWPFRRPIAISN 26
FS A + L+V+ L + I V LW +RP A S+
Sbjct: 211 FSFAFFYAIPLAVVIVLYSAIMVTLWMHKRPGAFSS 246
>SB_39349| Best HMM Match : 7tm_1 (HMM E-Value=0)
Length = 1125
Score = 26.6 bits (56), Expect = 7.2
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -2
Query: 133 FSLAGLILMALSVIPFLPADIFVVLWPFRRPIAISN 26
FS A + L+V+ L + I V LW +RP A S+
Sbjct: 954 FSFAFFYAIPLAVVIVLYSAIMVTLWMHKRPGAFSS 989
>SB_44672| Best HMM Match : ABC_tran (HMM E-Value=4.2039e-44)
Length = 945
Score = 26.2 bits (55), Expect = 9.5
Identities = 20/82 (24%), Positives = 37/82 (45%)
Frame = -2
Query: 271 RRFKNLRARLSFDTLSNSIALFSYCACPTTSRTKSRTNLECLV*MPFSLAGLILMALSVI 92
R F+ +R + L I + SRT +R N + + + + LI++ +S
Sbjct: 150 RHFETIRMAIGLVALLVIIVCYLVIWVKAKSRTAARNNRKTESNIKLAKSLLIVIFVSYT 209
Query: 91 PFLPADIFVVLWPFRRPIAISN 26
F+PA + ++L + AI N
Sbjct: 210 CFIPAAVCILLNFWSESKAIDN 231
>SB_8121| Best HMM Match : 7tm_1 (HMM E-Value=5.4e-08)
Length = 292
Score = 26.2 bits (55), Expect = 9.5
Identities = 20/82 (24%), Positives = 37/82 (45%)
Frame = -2
Query: 271 RRFKNLRARLSFDTLSNSIALFSYCACPTTSRTKSRTNLECLV*MPFSLAGLILMALSVI 92
R F+ +R + L I + SRT +R N + + + + LI++ +S
Sbjct: 150 RHFETIRMAIGLVALLVIIVCYLVIWVKAKSRTAARNNRKTESNIKLAKSLLIVIFVSYT 209
Query: 91 PFLPADIFVVLWPFRRPIAISN 26
F+PA + ++L + AI N
Sbjct: 210 CFIPAAVCILLNFWSESKAIDN 231
>SB_2480| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 288
Score = 26.2 bits (55), Expect = 9.5
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +3
Query: 96 TDKAIKIRPARLKGIQTKHSKFVRDLVREVVGHAQY-EKRAMELLKVSKDKRAL 254
TDK +K+ P +++ I S + V+ ++G AQY K +L ++K R L
Sbjct: 169 TDKGLKVDPVKVRAIVDMPSPTDKLGVQRLLGLAQYLAKFLPQLSDITKPLRDL 222
>SB_786| Best HMM Match : EGF (HMM E-Value=0)
Length = 1427
Score = 26.2 bits (55), Expect = 9.5
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = +3
Query: 171 LVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRK 302
L R V+ Y+ + + + ++ ++FL +RL ++ KRK
Sbjct: 1235 LTRNVIYRNPYQPITYDYRTIGEQRQRVRFLAKRLSKILKRKRK 1278
>SB_36665| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1277
Score = 26.2 bits (55), Expect = 9.5
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = -3
Query: 84 CQRISLSFCGLF 49
C+RIS SFCG+F
Sbjct: 1206 CRRISASFCGIF 1217
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,754,425
Number of Sequences: 59808
Number of extensions: 225863
Number of successful extensions: 725
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 678472135
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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