Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_L11
(392 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g53740.2 68416.m05937 60S ribosomal protein L36 (RPL36B) 60S ... 99 5e-22
At5g02450.1 68418.m00171 60S ribosomal protein L36 (RPL36C) 60S ... 99 9e-22
At2g37600.1 68415.m04613 60S ribosomal protein L36 (RPL36A) 99 9e-22
At3g53740.1 68416.m05936 60S ribosomal protein L36 (RPL36B) 60S ... 77 6e-15
At1g34590.1 68414.m04299 hypothetical protein 29 0.85
At4g27595.1 68417.m03964 protein transport protein-related low s... 29 1.5
At5g07410.1 68418.m00848 pectinesterase family protein contains ... 27 3.4
At1g69940.1 68414.m08049 pectinesterase family protein contains ... 27 3.4
At5g16270.1 68418.m01900 Rad21/Rec8-like family protein weak sim... 27 4.5
At4g35940.1 68417.m05113 expressed protein 27 4.5
At5g07430.1 68418.m00850 pectinesterase family protein contains ... 27 6.0
At4g38600.2 68417.m05463 HECT-domain-containing protein / ubiqui... 27 6.0
At4g38600.1 68417.m05464 HECT-domain-containing protein / ubiqui... 27 6.0
At1g72290.1 68414.m08357 trypsin and protease inhibitor family p... 27 6.0
At5g35170.1 68418.m04168 adenylate kinase family protein contain... 26 7.9
At5g28430.1 68418.m03453 hypothetical protein 26 7.9
At4g09360.1 68417.m01545 disease resistance protein (NBS-LRR cla... 26 7.9
At4g06603.1 68417.m01028 expressed protein 26 7.9
At3g60930.1 68416.m06816 expressed protein 26 7.9
At1g73180.1 68414.m08469 eukaryotic translation initiation facto... 26 7.9
At1g68560.1 68414.m07833 alpha-xylosidase (XYL1) identical to al... 26 7.9
>At3g53740.2 68416.m05937 60S ribosomal protein L36 (RPL36B) 60S
RIBOSOMAL PROTEIN L36 - Schizosaccharomyces pombe,
swissprot:Q92365
Length = 112
Score = 99 bits (238), Expect = 5e-22
Identities = 53/100 (53%), Positives = 67/100 (67%)
Frame = +3
Query: 39 IGLRKGHKTTKISAGKKGITDKAIKIRPARLKGIQTKHSKFVRDLVREVVGHAQYEKRAM 218
+GL KGH T+ + + RP KG +K + F+R+L++EV G A YEKR
Sbjct: 12 VGLNKGHVVTR----------RELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRIT 61
Query: 219 ELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLTQMR 338
ELLKV KDKRALK KR+LGTH RAKRKREE+S+VL +MR
Sbjct: 62 ELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMR 101
>At5g02450.1 68418.m00171 60S ribosomal protein L36 (RPL36C) 60S
ribosomal protein L36, Arabidopsis thaliana,
EMBL:AC004684
Length = 108
Score = 99.1 bits (236), Expect = 9e-22
Identities = 54/100 (54%), Positives = 66/100 (66%)
Frame = +3
Query: 39 IGLRKGHKTTKISAGKKGITDKAIKIRPARLKGIQTKHSKFVRDLVREVVGHAQYEKRAM 218
+GL KGH TK + RP KG +K + F+R+L++EV G A YEKR
Sbjct: 8 VGLNKGHVVTK----------REQPPRPNNRKGKTSKRTIFIRNLIKEVAGQAPYEKRIT 57
Query: 219 ELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLTQMR 338
ELLKV KDKRALK KR+LGTH RAKRKREE+S+VL +MR
Sbjct: 58 ELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMR 97
>At2g37600.1 68415.m04613 60S ribosomal protein L36 (RPL36A)
Length = 113
Score = 99.1 bits (236), Expect = 9e-22
Identities = 54/100 (54%), Positives = 66/100 (66%)
Frame = +3
Query: 39 IGLRKGHKTTKISAGKKGITDKAIKIRPARLKGIQTKHSKFVRDLVREVVGHAQYEKRAM 218
+GL KGH T+ + + RP KG +K + F+R L+REV G A YEKR
Sbjct: 12 VGLNKGHVVTR----------RELAPRPNSRKGKTSKRTIFIRKLIREVAGMAPYEKRIT 61
Query: 219 ELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLTQMR 338
ELLKV KDKRALK KR+LGTH RAKRKREE+S+VL +MR
Sbjct: 62 ELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMR 101
>At3g53740.1 68416.m05936 60S ribosomal protein L36 (RPL36B) 60S
RIBOSOMAL PROTEIN L36 - Schizosaccharomyces pombe,
swissprot:Q92365
Length = 103
Score = 76.6 bits (180), Expect = 6e-15
Identities = 46/100 (46%), Positives = 61/100 (61%)
Frame = +3
Query: 39 IGLRKGHKTTKISAGKKGITDKAIKIRPARLKGIQTKHSKFVRDLVREVVGHAQYEKRAM 218
+GL KGH T+ + + RP KG +K + F+R+L++EV G A YEKR
Sbjct: 12 VGLNKGHVVTR----------RELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRIT 61
Query: 219 ELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLTQMR 338
ELLKV+ KR+LGTH RAKRKREE+S+VL +MR
Sbjct: 62 ELLKVA---------KRKLGTHKRAKRKREEMSSVLRKMR 92
>At1g34590.1 68414.m04299 hypothetical protein
Length = 820
Score = 29.5 bits (63), Expect = 0.85
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +3
Query: 3 QSEIMAPRFEIAIGLRKGHKTTKISAGKKGITDKAIKIRPAR 128
+ ++ AP E A GH++ + A K G+TD+A + PA+
Sbjct: 770 KDDLKAPALESAPLSPGGHRSVESVADKAGVTDQAGSLLPAK 811
>At4g27595.1 68417.m03964 protein transport protein-related low
similarity to SP|P25386 Intracellular protein transport
protein USO1 {Saccharomyces cerevisiae}
Length = 1212
Score = 28.7 bits (61), Expect = 1.5
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Frame = +3
Query: 87 KGITDKAIKIRPARL-KGIQ--TKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALK 257
KG ++ +K+R A K I+ +K + + D + V H YE +A E + K + K
Sbjct: 1001 KGNENQELKVREASAAKRIEELSKMKESLLDKELQTVIHDNYELKAREASALKKIEELSK 1060
Query: 258 FLKRRLGTHIRAKRKREELSN 320
L+ TH K EE++N
Sbjct: 1061 LLEEASSTH----EKGEEITN 1077
>At5g07410.1 68418.m00848 pectinesterase family protein contains
Pfam profile: PF01095 pectinesterase
Length = 361
Score = 27.5 bits (58), Expect = 3.4
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 86 FASGYLCRFVAFSQTNCDFKSGSHDF 9
FA+ Y C+F F T CD +G+H F
Sbjct: 184 FAAFYNCKFYGFQDTICD-DTGNHFF 208
>At1g69940.1 68414.m08049 pectinesterase family protein contains
Pfam profile: PF01095 pectinesterase
Length = 361
Score = 27.5 bits (58), Expect = 3.4
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 86 FASGYLCRFVAFSQTNCDFKSGSHDF 9
FA+ Y C+F F T CD +G+H F
Sbjct: 184 FAAFYNCKFYGFQDTICD-DTGNHFF 208
>At5g16270.1 68418.m01900 Rad21/Rec8-like family protein weak
similarity to cohesion family protein SYN2 [Arabidopsis
thaliana] GI:12006360; contains Pfam profiles PF04824:
Conserved region of Rad21 / Rec8 like protein, PF04825:
N terminus of Rad21 / Rec8 like protein; supporting cDNA
gi|18157648|gb|AF400129.1|AF400129
Length = 1031
Score = 27.1 bits (57), Expect = 4.5
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Frame = +2
Query: 209 EGNGIAQSIER*ARP*VLEASP--RHTHPREEEA*RAQQRTNTDEE 340
E N +S + A P E P HTHP+EE+ Q+ D E
Sbjct: 662 EENKTEESSDPQAHPNDCEEQPGTAHTHPQEEQTINQQEELKDDNE 707
>At4g35940.1 68417.m05113 expressed protein
Length = 451
Score = 27.1 bits (57), Expect = 4.5
Identities = 20/75 (26%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Frame = +3
Query: 90 GITDKAIKIRPARLKGIQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKR 269
GI D+A+ + + +KG++ K K R R + +K+ + K K+K+ + +
Sbjct: 16 GIRDEAVIV--SSIKGVEEKAKKEQRRKDRRSDKKDKKDKKERKEKKEKKEKKRKEREGK 73
Query: 270 RLGTHIRA-KRKREE 311
+G+ R+ KR+R+E
Sbjct: 74 EVGSEKRSHKRRRKE 88
>At5g07430.1 68418.m00850 pectinesterase family protein contains
Pfam profile: PF01095 pectinesterase
Length = 361
Score = 26.6 bits (56), Expect = 6.0
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -1
Query: 83 ASGYLCRFVAFSQTNCDFKSGSHDF 9
A+ Y CRF F T CD K G+H F
Sbjct: 185 AAFYSCRFHGFQDTLCDDK-GNHFF 208
>At4g38600.2 68417.m05463 HECT-domain-containing protein /
ubiquitin-transferase family protein similar to
SP|Q14669Thyroid receptor interacting protein 12 (TRIP12)
{Homo sapiens}; contains Pfam profile PF00632:
HECT-domain (ubiquitin-transferase)
Length = 1794
Score = 26.6 bits (56), Expect = 6.0
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -3
Query: 360 GLGVRPPSSSVLVRC*ALHASSSRGCVCRGDASR 259
G GV PSSS H+S SR + GD S+
Sbjct: 915 GAGVSSPSSSTPASTTRRHSSRSRSAINIGDTSK 948
>At4g38600.1 68417.m05464 HECT-domain-containing protein /
ubiquitin-transferase family protein similar to
SP|Q14669Thyroid receptor interacting protein 12 (TRIP12)
{Homo sapiens}; contains Pfam profile PF00632:
HECT-domain (ubiquitin-transferase)
Length = 1888
Score = 26.6 bits (56), Expect = 6.0
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -3
Query: 360 GLGVRPPSSSVLVRC*ALHASSSRGCVCRGDASR 259
G GV PSSS H+S SR + GD S+
Sbjct: 988 GAGVSSPSSSTPASTTRRHSSRSRSAINIGDTSK 1021
>At1g72290.1 68414.m08357 trypsin and protease inhibitor family
protein / Kunitz family protein similar to water-soluble
chlorophyll protein [Raphanus sativus var. niger]
GI:16945735, BnD22 drought induced protein [Brassica
napus] GI:17813; contains Pfam profile PF00197: Trypsin
and protease inhibitor
Length = 215
Score = 26.6 bits (56), Expect = 6.0
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -2
Query: 121 GLILMALSVIPFLPADIFVVLWPFRRPIAIS 29
GL+ A++V+PF P I L P++ + +S
Sbjct: 55 GLVPAAITVLPFCPLGITQTLLPYQPGLPVS 85
>At5g35170.1 68418.m04168 adenylate kinase family protein contains
Pfam profile: PF00406 adenylate kinase
Length = 588
Score = 26.2 bits (55), Expect = 7.9
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -2
Query: 334 ICVSTLLSSSRFLFARMCVPRRRFKNLRARLSFDTL 227
I S+L SS L RRR+++LR RLSF +
Sbjct: 22 ISTSSLSPSSTSLPLLQSPIRRRYRSLRRRLSFSVI 57
>At5g28430.1 68418.m03453 hypothetical protein
Length = 486
Score = 26.2 bits (55), Expect = 7.9
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +3
Query: 3 QSEIMAPRFEIAIGLRKGHKTTKISAGKKGITDKAIKIRPAR 128
+ ++ AP E A GH++ + A + GITD+A + PA+
Sbjct: 436 KDDLKAPAPEPAPLSPGGHRSVESLADEAGITDQAGSLLPAK 477
>At4g09360.1 68417.m01545 disease resistance protein (NBS-LRR
class), putative domain signature NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 853
Score = 26.2 bits (55), Expect = 7.9
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = -2
Query: 280 VPRRRFKNLRARLSFDTLSNSIALFSYCACPTTSRTKSRTNLECLV 143
VP++RF + + +D S SI FS+ A T R S + +CLV
Sbjct: 461 VPKKRFPIISS--FYDLKSLSIMRFSHIADGTPFRCISFSGFQCLV 504
>At4g06603.1 68417.m01028 expressed protein
Length = 786
Score = 26.2 bits (55), Expect = 7.9
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +3
Query: 3 QSEIMAPRFEIAIGLRKGHKTTKISAGKKGITDKAIKIRPAR 128
+ ++ AP E A GH++ + A + GITD+A + PA+
Sbjct: 736 KDDLKAPAPEPAPLSPGGHRSVESLADEAGITDQAGSLLPAK 777
>At3g60930.1 68416.m06816 expressed protein
Length = 798
Score = 26.2 bits (55), Expect = 7.9
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +3
Query: 3 QSEIMAPRFEIAIGLRKGHKTTKISAGKKGITDKAIKIRPAR 128
+ ++ AP E A GH++ + A + GITD+A + PA+
Sbjct: 748 KDDLKAPAPEPAPLSPGGHRSVESLADEAGITDQAGSLLPAK 789
>At1g73180.1 68414.m08469 eukaryotic translation initiation
factor-related similar to eukaryotic translation
initiation factor 2A (GI:21956484) [Homo sapiens];
similar to Eukaryotic translation initiation factor 3
subunit 9 (eIF-3 eta) (eIF3 p116) (eIF3 p110) (eIF3b)
(Swiss-Prot:P55884) [Homo sapiens]
Length = 513
Score = 26.2 bits (55), Expect = 7.9
Identities = 18/72 (25%), Positives = 34/72 (47%)
Frame = +3
Query: 36 AIGLRKGHKTTKISAGKKGITDKAIKIRPARLKGIQTKHSKFVRDLVREVVGHAQYEKRA 215
++ L +G + SA KK I I +PA + KH+ V+ + + + K A
Sbjct: 429 SLKLGEGKSQGQGSAQKKTIAPNPIAQKPAAYRPPHAKHAAAVQAELLGISTTGEMSKNA 488
Query: 216 MELLKVSKDKRA 251
++ K ++K+A
Sbjct: 489 LKNKKKRENKKA 500
>At1g68560.1 68414.m07833 alpha-xylosidase (XYL1) identical to
alpha-xylosidase precursor GB:AAD05539 GI:4163997 from
[Arabidopsis thaliana]; contains Pfam profile PF01055:
Glycosyl hydrolases family 31; identical to cDNA
alpha-xylosidase precursor (XYL1) partial cds GI:4163996
Length = 915
Score = 26.2 bits (55), Expect = 7.9
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -2
Query: 262 KNLRARLSFDTLSNSIALFSYCACPTTSRTKSRTNLECL 146
K+ ++ ++ +S S +FSY P T K R+N E L
Sbjct: 113 KSRKSPITVQEISGSELIFSYTTDPFTFAVKRRSNHETL 151
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,212,338
Number of Sequences: 28952
Number of extensions: 158032
Number of successful extensions: 513
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 567552648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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