BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= I10A02NGRL0002_L10 (578 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U41994-2|AAO38634.1| 154|Caenorhabditis elegans Rnase h protein... 32 0.34 U41994-1|AAO91711.1| 155|Caenorhabditis elegans Rnase h protein... 32 0.34 AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of e... 29 1.8 Z35663-8|CAA84728.1| 249|Caenorhabditis elegans Hypothetical pr... 29 3.2 AL132865-13|CAB60609.1| 496|Caenorhabditis elegans Hypothetical... 29 3.2 AF016673-5|AAB66123.1| 684|Caenorhabditis elegans Hypothetical ... 29 3.2 U53155-4|AAC48265.1| 619|Caenorhabditis elegans Hypothetical pr... 28 4.2 Z54236-7|CAA90982.1| 1471|Caenorhabditis elegans Hypothetical pr... 28 5.5 AF047657-7|AAK18943.1| 424|Caenorhabditis elegans Hypothetical ... 28 5.5 AC024765-5|AAF60527.3| 975|Caenorhabditis elegans Hypothetical ... 28 5.5 Z69663-4|CAA93508.1| 287|Caenorhabditis elegans Hypothetical pr... 27 9.6 U64608-3|AAB04593.2| 349|Caenorhabditis elegans Serpentine rece... 27 9.6 U13019-5|AAC24444.1| 994|Caenorhabditis elegans Hypothetical pr... 27 9.6 AF099919-4|AAC68791.1| 230|Caenorhabditis elegans Hypothetical ... 27 9.6 >U41994-2|AAO38634.1| 154|Caenorhabditis elegans Rnase h protein 1.0, isoform b protein. Length = 154 Score = 31.9 bits (69), Expect = 0.34 Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 2/98 (2%) Frame = +3 Query: 78 FKTKDVDAVFVE--RQKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDNYTNKKAVEEF 251 F+T++ +V+ + KKV S F + + D YY + + + V +TN V+E Sbjct: 37 FETEEEAQKYVDDRKPKKVESTFPE----STHDTYYAVARGHSVGV----FTNYNEVKEH 88 Query: 252 LKLYRIGYLPKYYEFSIFYQKLREEAIALFHLFYYAKD 365 +K Y P + ++S EEAIA FH +Y K+ Sbjct: 89 IKNYP---QPLHKKWSTL-----EEAIAYFHKYYEGKE 118 >U41994-1|AAO91711.1| 155|Caenorhabditis elegans Rnase h protein 1.0, isoform a protein. Length = 155 Score = 31.9 bits (69), Expect = 0.34 Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 2/98 (2%) Frame = +3 Query: 78 FKTKDVDAVFVE--RQKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDNYTNKKAVEEF 251 F+T++ +V+ + KKV S F + + D YY + + + V +TN V+E Sbjct: 37 FETEEEAQKYVDDRKPKKVESTFPE----STHDTYYAVARGHSVGV----FTNYNEVKEH 88 Query: 252 LKLYRIGYLPKYYEFSIFYQKLREEAIALFHLFYYAKD 365 +K Y P + ++S EEAIA FH +Y K+ Sbjct: 89 IKNYP---QPLHKKWSTL-----EEAIAYFHKYYEGKE 118 >AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of efl-1 mutant phenotypeprotein 1 protein. Length = 4177 Score = 29.5 bits (63), Expect = 1.8 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 6/58 (10%) Frame = +3 Query: 132 SLFQDVDQVNVDDEYYKIGKDYDVEANIDNY----TNKKAVEEFLKLYR--IGYLPKY 287 S+ DV ++++DD+Y+ +G +D + D + AV F L+R +LP Y Sbjct: 2542 SMEDDVQRLDLDDDYFDMGGPFDAQRMDDMIFPPSFGRPAVTSFADLFRDDFDFLPPY 2599 >Z35663-8|CAA84728.1| 249|Caenorhabditis elegans Hypothetical protein T04A8.9 protein. Length = 249 Score = 28.7 bits (61), Expect = 3.2 Identities = 14/43 (32%), Positives = 23/43 (53%) Frame = +3 Query: 123 KVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDNYTNKKAVEEF 251 KVL L Q Q ++ YYK+ K + + N N ++A ++F Sbjct: 27 KVLGLAQSASQKDIKSAYYKLSKQHHPDTNPTN--KEEAAKKF 67 >AL132865-13|CAB60609.1| 496|Caenorhabditis elegans Hypothetical protein Y62E10A.16 protein. Length = 496 Score = 28.7 bits (61), Expect = 3.2 Identities = 12/26 (46%), Positives = 17/26 (65%) Frame = +1 Query: 325 RLLLFSTCSTMLKTLKPSTRVPLSLV 402 R+ F TCS +KT+K +PLS+V Sbjct: 290 RIEQFLTCSETIKTVKSDALIPLSIV 315 >AF016673-5|AAB66123.1| 684|Caenorhabditis elegans Hypothetical protein T06D4.4 protein. Length = 684 Score = 28.7 bits (61), Expect = 3.2 Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 3/51 (5%) Frame = +3 Query: 24 AGLIALVQSSVVSPKTYHFKTKDVDAVFVERQKKVLS---LFQDVDQVNVD 167 +GL+ +QS ++ + F K++DA+ + K+ L+ +F +D V D Sbjct: 297 SGLVRRIQSGILITNSSSFFGKNLDAIIQQTHKRTLANYLIFHFIDAVTFD 347 >U53155-4|AAC48265.1| 619|Caenorhabditis elegans Hypothetical protein ZC513.3 protein. Length = 619 Score = 28.3 bits (60), Expect = 4.2 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%) Frame = -3 Query: 300 WRTHSTWEDN-RFCTISRILQQLSYWCSYRC 211 WRT + E + +F +SRIL+Q + W S C Sbjct: 542 WRTFAIREKSEKFPNVSRILRQKTSWVSKNC 572 >Z54236-7|CAA90982.1| 1471|Caenorhabditis elegans Hypothetical protein C27B7.7 protein. Length = 1471 Score = 27.9 bits (59), Expect = 5.5 Identities = 12/48 (25%), Positives = 26/48 (54%) Frame = +1 Query: 364 TLKPSTRVPLSLVCT*MRDSSCTHIILQLSSAMILMDSFYQLLMKFIH 507 T P T PLS+ CT ++ S ++ +++ + +DS + ++ +H Sbjct: 256 TADPQTNEPLSITCT-VKSVSKASVLWKVNGIKVSVDSSFYTVVTSVH 302 >AF047657-7|AAK18943.1| 424|Caenorhabditis elegans Hypothetical protein F37B4.7 protein. Length = 424 Score = 27.9 bits (59), Expect = 5.5 Identities = 22/50 (44%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Frame = +3 Query: 300 IFYQKLREEAIALFHLFYYAKDFETFYKSA-AFARVHLNEGQFLYAYYIA 446 +FY IA F + Y K +T YKSA AF R L G+FL AY +A Sbjct: 101 VFYGWATATEIAYF-AYIYVKVPKTEYKSATAFTRAALLVGRFL-AYALA 148 >AC024765-5|AAF60527.3| 975|Caenorhabditis elegans Hypothetical protein Y39A3CR.3 protein. Length = 975 Score = 27.9 bits (59), Expect = 5.5 Identities = 12/51 (23%), Positives = 25/51 (49%) Frame = +1 Query: 373 PSTRVPLSLVCT*MRDSSCTHIILQLSSAMILMDSFYQLLMKFIHNSSFIW 525 P +++ ++ + + T +L + L+ Y+ MKF +N SF+W Sbjct: 361 PKSKIEEIILLLLINEVLSTREVLSTINQYQLLAQIYERAMKFANNDSFLW 411 >Z69663-4|CAA93508.1| 287|Caenorhabditis elegans Hypothetical protein K02B9.3a protein. Length = 287 Score = 27.1 bits (57), Expect = 9.6 Identities = 10/31 (32%), Positives = 18/31 (58%) Frame = +1 Query: 481 YQLLMKFIHNSSFIWTLYLRFIALKCQTVFF 573 + +L+ F+ FI TL +A+KC +F+ Sbjct: 7 FGILISFMDTFGFIATLLYLMVAIKCNGIFY 37 >U64608-3|AAB04593.2| 349|Caenorhabditis elegans Serpentine receptor, class v protein7 protein. Length = 349 Score = 27.1 bits (57), Expect = 9.6 Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 1/64 (1%) Frame = -1 Query: 398 SESGTLVEGFKVF-SIVEQVEKSNSLFP*LLVEDGELIVLGKITDSVQFQEFFNSFLIGV 222 + + TL E F S+V V S F +L+ E+++L + ++V F+ F IG+ Sbjct: 2 ASNATLPEWFDPLESVVSTVFMLGS-FVTILLYFVEILILVTLRNTVYKGMFYQIFTIGI 60 Query: 221 VIDV 210 +IDV Sbjct: 61 IIDV 64 >U13019-5|AAC24444.1| 994|Caenorhabditis elegans Hypothetical protein T12A2.5 protein. Length = 994 Score = 27.1 bits (57), Expect = 9.6 Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 10/111 (9%) Frame = +3 Query: 93 VDAVFVERQKKVLSLFQDVDQ-VNVDDEYYKIGKDYDVEANIDNYTNKKAVEEFLKLYRI 269 +D +E ++K LFQD+D+ V D+ Y ++ + IDN A +F+ + Sbjct: 343 MDVTNLENEEK--PLFQDLDKLVTTDESYQEVFLAMQMLLEIDNLDVINAKCQFIDSFYS 400 Query: 270 G--YL-PKYYEFSIFYQKLRE--EAI----ALFHLFYYAKDFETFYKSAAF 395 G Y+ P F + Q +R+ EA AL L ++ E K AF Sbjct: 401 GLEYIEPVIEAFGVSTQDIRKWNEATIFVDALVQLLKESRSHENLMKFLAF 451 >AF099919-4|AAC68791.1| 230|Caenorhabditis elegans Hypothetical protein F40G9.12 protein. Length = 230 Score = 27.1 bits (57), Expect = 9.6 Identities = 9/15 (60%), Positives = 11/15 (73%) Frame = +2 Query: 20 SSGAHCPRAIQCGVT 64 +SG HCPR + CG T Sbjct: 28 TSGDHCPRVLSCGHT 42 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,801,194 Number of Sequences: 27780 Number of extensions: 258926 Number of successful extensions: 743 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 728 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 743 length of database: 12,740,198 effective HSP length: 78 effective length of database: 10,573,358 effective search space used: 1205362812 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -