SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_L09
         (608 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0322 - 2335577-2335931,2336030-2336991                           31   0.54 
07_01_0600 - 4462337-4462774                                           30   1.2  
09_06_0209 - 21594374-21594494,21594579-21595522                       29   2.9  
09_02_0214 + 5846531-5846872,5847660-5847708,5847975-5848090,584...    28   5.0  
10_06_0006 - 9496990-9497592,9497695-9497802,9497884-9497997,949...    28   6.7  
09_06_0208 - 21590647-21590767,21590863-21591794                       27   8.8  
09_06_0207 - 21585910-21586027,21586642-21587193,21587270-21587577     27   8.8  
05_03_0283 + 11597128-11597467,11598033-11598046                       27   8.8  
05_03_0093 + 8340210-8340548,8344290-8344676,8344759-8345118           27   8.8  
02_04_0510 + 23558111-23559613                                         27   8.8  

>06_01_0322 - 2335577-2335931,2336030-2336991
          Length = 438

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = +2

Query: 449 RSAHLRVNLATHIAWRAAVLKVQTPRALPPPDARCSATKPVNRC 580
           R+A++   +AT   + A VL+  T R+L      C AT P++RC
Sbjct: 56  RAAYVSDPVATLNRFNADVLRATTRRSLARYTGPCMATNPIDRC 99


>07_01_0600 - 4462337-4462774
          Length = 145

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 20/68 (29%), Positives = 31/68 (45%)
 Frame = +2

Query: 395 FSAMVTMSHTMTSDYLTERSAHLRVNLATHIAWRAAVLKVQTPRALPPPDARCSATKPVN 574
           FS+M   S  + + Y      HLR+ +   I     V++   P  +P P  RCSA+   +
Sbjct: 34  FSSMPPRSRAVDAAYCYSAPVHLRLPVRHTII----VVRPPHPSTVPTPARRCSASSSSS 89

Query: 575 RCSEESPH 598
            C   +PH
Sbjct: 90  HCI--TPH 95


>09_06_0209 - 21594374-21594494,21594579-21595522
          Length = 354

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 549 RASGGGSARGVWTFRTAARQAICVAK 472
           R   G + RG W  R AA QA+ VA+
Sbjct: 235 RLDAGAAVRGPWVLRDAAAQAVYVAR 260


>09_02_0214 +
           5846531-5846872,5847660-5847708,5847975-5848090,
           5848169-5848282,5849050-5849100,5849746-5849834,
           5849911-5849971,5850103-5850180,5850334-5850441,
           5850832-5850957
          Length = 377

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = +2

Query: 455 AHLRVNLATHIAWRAAVLKVQTPRALPPPDARCSATKPVNRCS 583
           A LR+ + + IA  +++ +    +ALPPPD  CS  +  N C+
Sbjct: 220 AGLRMMVGSEIATVSSISR-HVDKALPPPDNICSLFQLENGCA 261


>10_06_0006 -
           9496990-9497592,9497695-9497802,9497884-9497997,
           9498170-9498219,9498346-9498434,9498542-9498738,
           9498877-9499038,9499337-9499455,9499579-9499666,
           9499744-9499849,9499968-9500056,9500167-9500319,
           9500434-9500526,9500625-9500691,9500811-9500923,
           9501544-9501639,9501782-9501961
          Length = 808

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
 Frame = +1

Query: 70  PGQCRYVLIHDYVDR---NFTVLLQLQNGQPKALVLEDK-SGTIIELKDNGQ-VTLNGAA 234
           P Q  Y +   ++++   N  +L +   G P  + +     G++    + G  VTL+  A
Sbjct: 679 PSQQLYHVPRSFLNKGEPNTLILFEEAGGDPSEVAVRTVVEGSVCASAEVGDTVTLSCGA 738

Query: 235 HGFPVIEKDVFAFKQTNGRIG 297
           HG  +   DV +F    GR G
Sbjct: 739 HGRTISSVDVASFGVARGRCG 759


>09_06_0208 - 21590647-21590767,21590863-21591794
          Length = 350

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 537 GGSARGVWTFRTAARQAICVAK 472
           G + RG W  R AA QA+ VA+
Sbjct: 236 GAAVRGPWVLRDAAAQAVYVAR 257


>09_06_0207 - 21585910-21586027,21586642-21587193,21587270-21587577
          Length = 325

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 537 GGSARGVWTFRTAARQAICVAK 472
           G + RG W  R AA QA+ VA+
Sbjct: 211 GAAVRGPWVLRDAAAQAVYVAR 232


>05_03_0283 + 11597128-11597467,11598033-11598046
          Length = 117

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 561 VAEQRASGGGSARGVWTFRTAARQAICVA 475
           VA    +GGGS  G W +R AA  A+ +A
Sbjct: 70  VAVAMVAGGGSGDGGWRWRLAAVVAVALA 98


>05_03_0093 + 8340210-8340548,8344290-8344676,8344759-8345118
          Length = 361

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +3

Query: 528 HSHHQMHAALPPSL*TGV 581
           H HH  H ALPP L  GV
Sbjct: 28  HHHHHHHHALPPHLPAGV 45


>02_04_0510 + 23558111-23559613
          Length = 500

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -2

Query: 412 CYHRREDHVVCLGRNHSLRSSKPQV*KYRRPLIRI 308
           CY+ R+D  + + +    +S KP +  Y RPL+R+
Sbjct: 371 CYYGRDDDALNVLKEMEAQSCKPDIQSY-RPLLRL 404


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,187,678
Number of Sequences: 37544
Number of extensions: 357529
Number of successful extensions: 1112
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1085
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1112
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -