Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_L09
(608 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0322 - 2335577-2335931,2336030-2336991 31 0.54
07_01_0600 - 4462337-4462774 30 1.2
09_06_0209 - 21594374-21594494,21594579-21595522 29 2.9
09_02_0214 + 5846531-5846872,5847660-5847708,5847975-5848090,584... 28 5.0
10_06_0006 - 9496990-9497592,9497695-9497802,9497884-9497997,949... 28 6.7
09_06_0208 - 21590647-21590767,21590863-21591794 27 8.8
09_06_0207 - 21585910-21586027,21586642-21587193,21587270-21587577 27 8.8
05_03_0283 + 11597128-11597467,11598033-11598046 27 8.8
05_03_0093 + 8340210-8340548,8344290-8344676,8344759-8345118 27 8.8
02_04_0510 + 23558111-23559613 27 8.8
>06_01_0322 - 2335577-2335931,2336030-2336991
Length = 438
Score = 31.5 bits (68), Expect = 0.54
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +2
Query: 449 RSAHLRVNLATHIAWRAAVLKVQTPRALPPPDARCSATKPVNRC 580
R+A++ +AT + A VL+ T R+L C AT P++RC
Sbjct: 56 RAAYVSDPVATLNRFNADVLRATTRRSLARYTGPCMATNPIDRC 99
>07_01_0600 - 4462337-4462774
Length = 145
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/68 (29%), Positives = 31/68 (45%)
Frame = +2
Query: 395 FSAMVTMSHTMTSDYLTERSAHLRVNLATHIAWRAAVLKVQTPRALPPPDARCSATKPVN 574
FS+M S + + Y HLR+ + I V++ P +P P RCSA+ +
Sbjct: 34 FSSMPPRSRAVDAAYCYSAPVHLRLPVRHTII----VVRPPHPSTVPTPARRCSASSSSS 89
Query: 575 RCSEESPH 598
C +PH
Sbjct: 90 HCI--TPH 95
>09_06_0209 - 21594374-21594494,21594579-21595522
Length = 354
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 549 RASGGGSARGVWTFRTAARQAICVAK 472
R G + RG W R AA QA+ VA+
Sbjct: 235 RLDAGAAVRGPWVLRDAAAQAVYVAR 260
>09_02_0214 +
5846531-5846872,5847660-5847708,5847975-5848090,
5848169-5848282,5849050-5849100,5849746-5849834,
5849911-5849971,5850103-5850180,5850334-5850441,
5850832-5850957
Length = 377
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = +2
Query: 455 AHLRVNLATHIAWRAAVLKVQTPRALPPPDARCSATKPVNRCS 583
A LR+ + + IA +++ + +ALPPPD CS + N C+
Sbjct: 220 AGLRMMVGSEIATVSSISR-HVDKALPPPDNICSLFQLENGCA 261
>10_06_0006 -
9496990-9497592,9497695-9497802,9497884-9497997,
9498170-9498219,9498346-9498434,9498542-9498738,
9498877-9499038,9499337-9499455,9499579-9499666,
9499744-9499849,9499968-9500056,9500167-9500319,
9500434-9500526,9500625-9500691,9500811-9500923,
9501544-9501639,9501782-9501961
Length = 808
Score = 27.9 bits (59), Expect = 6.7
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Frame = +1
Query: 70 PGQCRYVLIHDYVDR---NFTVLLQLQNGQPKALVLEDK-SGTIIELKDNGQ-VTLNGAA 234
P Q Y + ++++ N +L + G P + + G++ + G VTL+ A
Sbjct: 679 PSQQLYHVPRSFLNKGEPNTLILFEEAGGDPSEVAVRTVVEGSVCASAEVGDTVTLSCGA 738
Query: 235 HGFPVIEKDVFAFKQTNGRIG 297
HG + DV +F GR G
Sbjct: 739 HGRTISSVDVASFGVARGRCG 759
>09_06_0208 - 21590647-21590767,21590863-21591794
Length = 350
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -3
Query: 537 GGSARGVWTFRTAARQAICVAK 472
G + RG W R AA QA+ VA+
Sbjct: 236 GAAVRGPWVLRDAAAQAVYVAR 257
>09_06_0207 - 21585910-21586027,21586642-21587193,21587270-21587577
Length = 325
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -3
Query: 537 GGSARGVWTFRTAARQAICVAK 472
G + RG W R AA QA+ VA+
Sbjct: 211 GAAVRGPWVLRDAAAQAVYVAR 232
>05_03_0283 + 11597128-11597467,11598033-11598046
Length = 117
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -3
Query: 561 VAEQRASGGGSARGVWTFRTAARQAICVA 475
VA +GGGS G W +R AA A+ +A
Sbjct: 70 VAVAMVAGGGSGDGGWRWRLAAVVAVALA 98
>05_03_0093 + 8340210-8340548,8344290-8344676,8344759-8345118
Length = 361
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = +3
Query: 528 HSHHQMHAALPPSL*TGV 581
H HH H ALPP L GV
Sbjct: 28 HHHHHHHHALPPHLPAGV 45
>02_04_0510 + 23558111-23559613
Length = 500
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -2
Query: 412 CYHRREDHVVCLGRNHSLRSSKPQV*KYRRPLIRI 308
CY+ R+D + + + +S KP + Y RPL+R+
Sbjct: 371 CYYGRDDDALNVLKEMEAQSCKPDIQSY-RPLLRL 404
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,187,678
Number of Sequences: 37544
Number of extensions: 357529
Number of successful extensions: 1112
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1085
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1112
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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