Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_L09
(608 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF068711-1|AAC17775.2| 1121|Caenorhabditis elegans Hypothetical ... 29 2.6
Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical pr... 29 3.4
U40421-1|AAA81437.2| 178|Caenorhabditis elegans Helix loop heli... 29 3.4
AF037063-1|AAC26105.1| 178|Caenorhabditis elegans twist protein. 29 3.4
Z81506-1|CAB04128.1| 555|Caenorhabditis elegans Hypothetical pr... 28 4.5
AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical ... 28 4.5
Z81544-4|CAB04431.2| 329|Caenorhabditis elegans Hypothetical pr... 28 6.0
Z79598-3|CAB01865.1| 680|Caenorhabditis elegans Hypothetical pr... 28 6.0
AJ242473-1|CAB43345.1| 680|Caenorhabditis elegans SYM-1 protein... 28 6.0
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 27 7.9
AF002198-5|AAF99934.2| 329|Caenorhabditis elegans Serpentine re... 27 7.9
>AF068711-1|AAC17775.2| 1121|Caenorhabditis elegans Hypothetical
protein R09A1.1 protein.
Length = 1121
Score = 29.1 bits (62), Expect = 2.6
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Frame = +1
Query: 70 PGQCRYVLIHDYVDRNFTVLLQL--QNGQPKALVLEDKSGTIIELKDNGQVTLNGAAHGF 243
P QCR DY + + +++ +GQP E+K +I+ G++ N HG
Sbjct: 672 PRQCRDF---DYNQQGYHAIMRAIEDSGQPVLWADENKHSAVIQ----GELQFNQNQHGI 724
Query: 244 PVIEKDVFAFKQTNG 288
VIE+ + K T G
Sbjct: 725 EVIEQFLQNIKSTIG 739
>Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical protein
K03H1.5 protein.
Length = 1385
Score = 28.7 bits (61), Expect = 3.4
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 391 GLLGDGNNEPYDDFRLPNGKI 453
GLLG NN+P DD P+G +
Sbjct: 1036 GLLGTYNNDPADDLTTPSGTV 1056
>U40421-1|AAA81437.2| 178|Caenorhabditis elegans Helix loop helix
protein 8 protein.
Length = 178
Score = 28.7 bits (61), Expect = 3.4
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -2
Query: 214 PVHCL*AQ*WFRSCPP 167
P HCL Q W+++CPP
Sbjct: 134 PPHCLMPQPWYQTCPP 149
>AF037063-1|AAC26105.1| 178|Caenorhabditis elegans twist protein.
Length = 178
Score = 28.7 bits (61), Expect = 3.4
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -2
Query: 214 PVHCL*AQ*WFRSCPP 167
P HCL Q W+++CPP
Sbjct: 134 PPHCLMPQPWYQTCPP 149
>Z81506-1|CAB04128.1| 555|Caenorhabditis elegans Hypothetical
protein F16H6.1 protein.
Length = 555
Score = 28.3 bits (60), Expect = 4.5
Identities = 18/49 (36%), Positives = 27/49 (55%)
Frame = +1
Query: 139 QNGQPKALVLEDKSGTIIELKDNGQVTLNGAAHGFPVIEKDVFAFKQTN 285
Q+G PK+ + +D+SG D G+ NG A GFP++E + TN
Sbjct: 98 QSGSPKSCLWDDQSG------DAGK--YNGFAPGFPLLEIGSCVYVPTN 138
>AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical
protein C08G9.2 protein.
Length = 2224
Score = 28.3 bits (60), Expect = 4.5
Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Frame = -1
Query: 152 GCPFCSCRSTVKFLST*SCINT*RHCPGKV---KCLPSNVKMCCPLM 21
GCP C CRS +FL+ N R P K +C P V C P M
Sbjct: 1230 GCPICDCRSPCEFLNC-PAGNVCRMIPVKCTTPECRP--VAKCIPNM 1273
>Z81544-4|CAB04431.2| 329|Caenorhabditis elegans Hypothetical
protein F49C5.2 protein.
Length = 329
Score = 27.9 bits (59), Expect = 6.0
Identities = 15/47 (31%), Positives = 20/47 (42%)
Frame = +1
Query: 241 FPVIEKDVFAFKQTNGRIGLGSKYGLMAFCTSKLEVCYFEVNGFYLG 381
FP+ + F TN IG L +F E C++ N YLG
Sbjct: 125 FPLWHMKKYRFNPTNFGIGFSLLIALFSFAVLLPEGCHYLFNRDYLG 171
>Z79598-3|CAB01865.1| 680|Caenorhabditis elegans Hypothetical
protein C44H4.3 protein.
Length = 680
Score = 27.9 bits (59), Expect = 6.0
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -1
Query: 314 PYLEPRPIRPLVCLNANTSFSMT 246
P +PRPIRP+ C N T+ + T
Sbjct: 446 PKAQPRPIRPVCCSNEITTTTTT 468
>AJ242473-1|CAB43345.1| 680|Caenorhabditis elegans SYM-1 protein
protein.
Length = 680
Score = 27.9 bits (59), Expect = 6.0
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -1
Query: 314 PYLEPRPIRPLVCLNANTSFSMT 246
P +PRPIRP+ C N T+ + T
Sbjct: 446 PKAQPRPIRPVCCSNEITTTTTT 468
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 27.5 bits (58), Expect = 7.9
Identities = 18/48 (37%), Positives = 24/48 (50%)
Frame = +2
Query: 398 SAMVTMSHTMTSDYLTERSAHLRVNLATHIAWRAAVLKVQTPRALPPP 541
SA V H MT+ +T +A+HI AA + V TP +PPP
Sbjct: 1089 SAAVQSQHPMTAQSVTP--------MASHIVPVAAPVPVPTPFTIPPP 1128
>AF002198-5|AAF99934.2| 329|Caenorhabditis elegans Serpentine
receptor, class x protein122 protein.
Length = 329
Score = 27.5 bits (58), Expect = 7.9
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = +1
Query: 241 FPVIEKDVFAFKQTNGRIGLGSKYGLMAFCTSKLEVCYFEVNGFYLG 381
FP+ + F TN IG+ + +F E C++ N YLG
Sbjct: 125 FPIWHMKKYRFNPTNIGIGVALLIAVFSFAVLLPEGCHYLFNRDYLG 171
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,861,334
Number of Sequences: 27780
Number of extensions: 285582
Number of successful extensions: 780
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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