Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_L09
         (608 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       27   0.14 
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    22   5.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   5.4  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   9.4  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 27.1 bits (57), Expect = 0.14
 Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +1

Query: 298 LGSKYGLMAFCTSKLEVCYFEVNGFYLGKLRG-LLGDGNNEPYDDFRLPNGKICTSESEF 474
           +   +G     T+K +  YF+  G   GK RG ++ + NN+ +   +  +     +ESEF
Sbjct: 1   MADDWGKTVSYTNKKDESYFDEGGRSYGKGRGFIIQNNNNDDWSVGKKNSNSGTINESEF 60

Query: 475 GN 480
            +
Sbjct: 61  ND 62


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +2

Query: 548 RCSATKPVNRCSEESPH 598
           R + T  + +C E SPH
Sbjct: 244 RTAETGTIRKCDESSPH 260


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +1

Query: 373  YLGKLRGLLGDGNNEPYDDFRLPNGKICTSESEFGNAYSL 492
            Y   +RGL G+ +++  +DF  P   +      F  +Y+L
Sbjct: 1590 YRYSVRGLCGNFDHDSTNDFVGPKNCLFRKPEHFVASYAL 1629


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +3

Query: 162 GSGGQERNHH*A*RQWT 212
           G  GQ  +HH   + WT
Sbjct: 396 GHSGQSSSHHHGSKSWT 412


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,561
Number of Sequences: 438
Number of extensions: 3423
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)