Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_L09
         (608 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g33811.1 68414.m04180 GDSL-motif lipase/hydrolase family prot...    29   2.4  
At5g58170.1 68418.m07281 glycerophosphoryl diester phosphodieste...    27   7.4  
At5g58050.1 68418.m07265 glycerophosphoryl diester phosphodieste...    27   7.4  
At5g12970.1 68418.m01487 C2 domain-containing protein contains I...    27   9.7  

>At1g33811.1 68414.m04180 GDSL-motif lipase/hydrolase family protein
           similar to family II lipases EXL3 GI:15054386, EXL1
           GI:15054382, EXL2 GI:15054384 from [Arabidopsis
           thaliana]; contains Pfam profile PF00657: GDSL-like
           Lipase/Acylhydrolase
          Length = 370

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 199 KDNGQVTLNGAAHGFPVIEKDVFAFKQTNGRI 294
           K    + +NGAA+GF V++K      + NG+I
Sbjct: 286 KSTYDLAVNGAAYGFEVVDKGCCGVGRNNGQI 317


>At5g58170.1 68418.m07281 glycerophosphoryl diester
           phosphodiesterase family protein contains Pfam PF03009 :
           Glycerophosphoryl diester phosphodiesterase family;
           similar to Glycerophosphoryl diester phosphodiesterase
           precursor  (Glycerophosphodiester phosphodiesterase)
           (Surface-exposed lipoprotein D) (Protein D)
           (ImmunoglobulinD-binding protein) (IGD-binding protein)
           (SP:Q06282) {Haemophilus influenzae}
          Length = 750

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = +1

Query: 172 DKSGTIIELKDNGQVTLNGAAHGF-PVIEKDVFAFKQTNGRI 294
           D S   ++  DNGQ +++G    F P   + +  F   NG +
Sbjct: 308 DPSAEYLQFVDNGQFSVDGVITDFPPTASQSITCFSHQNGNL 349


>At5g58050.1 68418.m07265 glycerophosphoryl diester
           phosphodiesterase family protein contains Pfam PF03009 :
           Glycerophosphoryl diester phosphodiesterase family;
           similar to Glycerophosphoryl diester phosphodiesterase
           precursor  (Glycerophosphodiester phosphodiesterase)
           (Surface-exposed lipoprotein D) (Protein D)
           (ImmunoglobulinD-binding protein) (IGD-binding protein)
           (SP:Q06282) {Haemophilus influenzae}
          Length = 753

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = +1

Query: 172 DKSGTIIELKDNGQVTLNGAAHGF-PVIEKDVFAFKQTNGRI 294
           D S   ++  DNGQ +++G    F P   + +  F   NG +
Sbjct: 308 DPSAEYLQFVDNGQFSVDGVITDFPPTASQSITCFSHQNGNL 349


>At5g12970.1 68418.m01487 C2 domain-containing protein contains
           INTERPRO:IPR000008 C2 domain
          Length = 769

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
 Frame = +1

Query: 265 FAFKQTNGRIGLGSKYGLMAFCTSKL--EVCYFEVNGFYLGKLRGLLGDGNNEPYDDFRL 438
           FA K+T+ +IG GS  G     T  L  ++ Y  V      +L G    G+ +PY + +L
Sbjct: 10  FALKETSPKIGAGSVTGDKLCSTYDLVEQMHYLYVRVVKAKELPGKDVTGSCDPYVEVKL 69

Query: 439 PNGKICTSESE 471
            N +  T   E
Sbjct: 70  GNYRGMTKHFE 80


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,154,953
Number of Sequences: 28952
Number of extensions: 263033
Number of successful extensions: 655
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)