Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_L08
(503 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1032 + 25542420-25542573,25543511-25543577,25543816-255439... 30 1.2
05_07_0270 + 28844330-28844727,28844847-28844969,28845082-28845490 29 2.8
07_03_1157 - 24419157-24419948 28 3.7
02_05_0902 + 32620668-32621209,32621847-32622258,32622471-326226... 28 3.7
07_03_1159 - 24427896-24428288 28 4.9
02_05_0869 - 32344821-32344916,32345255-32345347,32345418-323455... 27 6.5
12_01_0394 - 3105306-3106596,3107815-3107861 27 8.6
10_08_0366 - 17232010-17232061,17232546-17232601,17232692-172327... 27 8.6
>12_02_1032 +
25542420-25542573,25543511-25543577,25543816-25543918,
25544435-25544505,25544639-25544702,25545260-25545316,
25545435-25545593,25545967-25546035,25546111-25546202,
25546579-25546657,25546923-25547088,25547480-25547604,
25547737-25548078,25548271-25548432,25548520-25548624,
25548766-25548860,25548948-25549044,25549848-25550165,
25550228-25550296
Length = 797
Score = 29.9 bits (64), Expect = 1.2
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 223 GKKVDASPETPEQADQPQPEIPELV 297
G DA+ E P+Q QPQP+ P L+
Sbjct: 700 GHHQDAAAEAPQQQQQPQPQPPPLL 724
>05_07_0270 + 28844330-28844727,28844847-28844969,28845082-28845490
Length = 309
Score = 28.7 bits (61), Expect = 2.8
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +1
Query: 142 RSGDTPLEEINPYLAEAFHAIPA--GRSVGKKVDASPETPEQADQPQP 279
RS + P + Y+AE HA+P G + P +P+Q Q QP
Sbjct: 193 RSPEKPGVLVITYIAEHCHAVPTQLNSLAGTTRNNKPASPDQQQQQQP 240
>07_03_1157 - 24419157-24419948
Length = 263
Score = 28.3 bits (60), Expect = 3.7
Identities = 20/65 (30%), Positives = 29/65 (44%)
Frame = +1
Query: 109 PERPGYVPVYIRSGDTPLEEINPYLAEAFHAIPAGRSVGKKVDASPETPEQADQPQPEIP 288
P P VP + + + P +P + E H PA + A PE P+ + P P +P
Sbjct: 123 PPHPAVVPEFPKHEEPP----HPAVPELPH--PAVPEIPHP--AVPELPKHEEPPHPVVP 174
Query: 289 ELVDP 303
EL P
Sbjct: 175 ELPKP 179
>02_05_0902 +
32620668-32621209,32621847-32622258,32622471-32622675,
32622712-32622806,32622945-32623557,32623652-32623820,
32624392-32624749,32625226-32625336,32626207-32626561,
32627262-32627484,32627837-32628058,32628628-32628781
Length = 1152
Score = 28.3 bits (60), Expect = 3.7
Identities = 14/25 (56%), Positives = 15/25 (60%)
Frame = +2
Query: 98 GSFYRRDRVTYRST*GPEIRHLKRL 172
GS YR D Y+S PE R LKRL
Sbjct: 177 GSIYRMDIARYKSQNMPEARGLKRL 201
>07_03_1159 - 24427896-24428288
Length = 130
Score = 27.9 bits (59), Expect = 4.9
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 238 ASPETPEQADQPQPEIPELVDP 303
A PE P+ + P PE+PEL P
Sbjct: 68 AVPEFPKVPELPHPEVPELPKP 89
>02_05_0869 -
32344821-32344916,32345255-32345347,32345418-32345551,
32345863-32346013,32346337-32346407,32346683-32346828,
32347172-32347221,32347552-32347628,32347716-32347776,
32347859-32347912,32347999-32348058,32348491-32348624,
32349740-32350418
Length = 601
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/61 (22%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +1
Query: 109 PERPGYVPVYIRSGDTPLEEINPYLAEAFHAIPAGRSVGKKVDASPETPEQ-ADQPQPEI 285
P+ +VP + + P+E++ P + +P ++ +V A P+ + A++ Q +I
Sbjct: 455 PDLADFVPSGVPNSAEPIEKVTPTNVPRQNDVPKEKTCLPEVKAKPKVQNKGAEKTQSKI 514
Query: 286 P 288
P
Sbjct: 515 P 515
>12_01_0394 - 3105306-3106596,3107815-3107861
Length = 445
Score = 27.1 bits (57), Expect = 8.6
Identities = 19/54 (35%), Positives = 26/54 (48%)
Frame = +2
Query: 131 RST*GPEIRHLKRLTRI*PKRSTLSQLAEASVKKSTPHRKLPNKRTNLNQKYRN 292
RS+ GP R R R +S + V+KS + + PNKR N+N RN
Sbjct: 23 RSSFGPSQRKNCRSKRSKGFKSKVMNGIANDVRKSQFYYRQPNKRGNVNGDRRN 76
>10_08_0366 -
17232010-17232061,17232546-17232601,17232692-17232727,
17232861-17232941,17233060-17233131,17233394-17233465,
17233555-17233659,17233754-17233804,17234075-17234109,
17234692-17234736,17234940-17234973
Length = 212
Score = 27.1 bits (57), Expect = 8.6
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +1
Query: 160 LEEINPYLAEAFHAIPAGRSVGKKVDASPETPEQADQPQPEIPELVDP 303
L+EI +A + P GR GKKV A + + D+ + + L +P
Sbjct: 167 LDEIGVDIASQLSSAPKGRITGKKVQA--DESSELDELEKRLAALKNP 212
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,938,326
Number of Sequences: 37544
Number of extensions: 197026
Number of successful extensions: 648
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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