Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_L08
         (503 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g56590.1 68416.m06293 hydroxyproline-rich glycoprotein family...    29   2.4  
At5g16840.1 68418.m01973 RNA recognition motif (RRM)-containing ...    28   4.1  
At5g09480.1 68418.m01097 hydroxyproline-rich glycoprotein family...    27   7.2  
At3g14960.1 68416.m01892 galactosyltransferase family protein co...    27   9.5  
At1g49490.1 68414.m05547 leucine-rich repeat family protein / ex...    27   9.5  
At1g04890.1 68414.m00486 hypothetical protein contains Pfam prof...    27   9.5  

>At3g56590.1 68416.m06293 hydroxyproline-rich glycoprotein family
           protein 
          Length = 477

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 20/77 (25%), Positives = 25/77 (32%)
 Frame = +1

Query: 82  EARPKWQFLPERPGYVPVYIRSGDTPLEEINPYLAEAFHAIPAGRSVGKKVDASPETPEQ 261
           E  P+    P   G+ P    +  +PL   NP         P G S      A P     
Sbjct: 346 ELAPEPSLSPPTKGFAPASAPTKHSPLPPRNPPCPYEQRR-PKGNSALNHHTAPPTPAPH 404

Query: 262 ADQPQPEIPELVDPIHY 312
             QP P  P    P H+
Sbjct: 405 RSQPHPPAPNPAPPRHH 421


>At5g16840.1 68418.m01973 RNA recognition motif (RRM)-containing
           protein predicted proteins - Arabidopsis thaliana
          Length = 259

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +1

Query: 211 GRSVGKKVDASPETPEQADQPQPEIPELVDPIH 309
           G+   +KV+A  E P Q  Q Q ++PE   PIH
Sbjct: 222 GQKTKEKVEA--EQPSQPAQSQQQLPEGYSPIH 252


>At5g09480.1 68418.m01097 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965; Common family members At5g09530,
           At5g09520, At1g44222 [Arabidopsis thaliana]
          Length = 144

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 244 PETPEQADQPQPEIPELVDPIHYP 315
           PE PE+ + P PE PE+ +    P
Sbjct: 55  PEVPEEPELPSPEEPEIPEEPEIP 78


>At3g14960.1 68416.m01892 galactosyltransferase family protein
           contains Pfam profile: PF01762 galactosyltransferase
          Length = 343

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -2

Query: 151 LRTLCRPVRNPVSPVETAIWDVPQ 80
           L TLC P     SP   A+WD+P+
Sbjct: 292 LHTLCEP---ECSPYSIAVWDIPK 312


>At1g49490.1 68414.m05547 leucine-rich repeat family protein /
           extensin family protein contains similarity to disease
           resistance protein GI:3894383 from [Lycopersicon
           esculentum]; contains leucine-rich repeats,
           Pfam:PF00560; contains proline rich extensin domains,
           INTERPRO:IPR002965
          Length = 847

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
 Frame = +1

Query: 85  ARPKWQFLPERPGYVPVYIR-SGDTPLEEINPYLAEAFHAIPAGRSVGKKVDASPETPEQ 261
           ++P+    PE+P   P   +     P E  N +        P  +    +    PE P+ 
Sbjct: 420 SKPETPKTPEQPSPKPQPPKHESPKPEEPENKHELPKQKESPKPQPSKPEDSPKPEQPKP 479

Query: 262 ADQPQPEIPELVDP 303
            + P+PE P++ +P
Sbjct: 480 EESPKPEQPQIPEP 493


>At1g04890.1 68414.m00486 hypothetical protein contains Pfam profile
           PF04576: Protein of unknown function, DUF593
          Length = 494

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -3

Query: 126 VTRSLR*KLPFGTCLNDDTAN 64
           V RS++ K+PFG+  +DD +N
Sbjct: 21  VDRSIKSKIPFGSITSDDDSN 41


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,166,319
Number of Sequences: 28952
Number of extensions: 166504
Number of successful extensions: 455
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 451
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 898188928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)