Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_L07
(538 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 182 4e-47
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 83 3e-17
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 82 6e-17
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 56 4e-09
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p... 27 1.8
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 27 2.3
SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce... 27 2.3
SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces pom... 27 2.3
SPBC13E7.06 |msd1|mug172|spindle pole body protein Msd1|Schizosa... 26 3.1
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo... 26 3.1
SPAC343.08c |mrp17||mitochondrial ribosomal protein subunit Mrp1... 26 3.1
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 26 3.1
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 4.1
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha... 25 5.4
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 5.4
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos... 25 5.4
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 7.2
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 25 7.2
SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual 25 9.5
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe... 25 9.5
SPAC227.02c |||rRNA processing protein Rrp15 |Schizosaccharomyce... 25 9.5
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa... 25 9.5
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe... 25 9.5
SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr... 25 9.5
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 182 bits (442), Expect = 4e-47
Identities = 81/113 (71%), Positives = 99/113 (87%), Gaps = 1/113 (0%)
Frame = +2
Query: 2 SIQNKNSSYFVEWIPNNVKTAVCDIPPKGLKMSSTFIGNTTAIQELFKRISEQFSAMFRR 181
S+Q KNS+YFVEWIP+NV AVC +PPK LKMS+TFIGN+T+IQE+F+R+ +QFSAMFRR
Sbjct: 332 SVQTKNSAYFVEWIPDNVLKAVCSVPPKDLKMSATFIGNSTSIQEIFRRLGDQFSAMFRR 391
Query: 182 KAFLHWYTGEGMDEMEFNEAESNVNDLVSEYQQYQDA-TAEDDTEFDQEDMEE 337
KAFLHWYTGEGMDEMEF EAESN+NDLVSEYQQYQ+A E D +++ E+ +E
Sbjct: 392 KAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEAGIDEGDEDYEIEEEKE 444
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 82.6 bits (195), Expect = 3e-17
Identities = 38/110 (34%), Positives = 63/110 (57%), Gaps = 8/110 (7%)
Frame = +2
Query: 2 SIQNKNSSYFVEWIPNNVKTAVCDIPPKGLKMSST--------FIGNTTAIQELFKRISE 157
+I+ K + FV+W P K +CD PP+ ++ S + NTT+I E + R+
Sbjct: 334 TIKAKRTIQFVDWCPTGFKIGICDRPPQHIEGSEIAKVDRAVCMLSNTTSIAEAWSRLDH 393
Query: 158 QFSAMFRRKAFLHWYTGEGMDEMEFNEAESNVNDLVSEYQQYQDATAEDD 307
+F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++ + E D
Sbjct: 394 KFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEEVGQDSMEVD 443
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 81.8 bits (193), Expect = 6e-17
Identities = 40/117 (34%), Positives = 67/117 (57%), Gaps = 9/117 (7%)
Frame = +2
Query: 2 SIQNKNSSYFVEWIPNNVKTAVCDIPPKGLKMSST--------FIGNTTAIQELFKRISE 157
SI+++ + FV+W P K +C PP+ + S + NTT+I E + R+
Sbjct: 338 SIKSRRTIQFVDWCPTGFKIGICYEPPQHVPGSGIAKVNRAVCMLSNTTSIAEAWSRLDH 397
Query: 158 QFSAMFRRKAFLHWYTGEGMDEMEFNEAESNVNDLVSEYQQY-QDATAEDDTEFDQE 325
+F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++ QD+ + E D+E
Sbjct: 398 KFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEEVGQDSMDNEMYEADEE 454
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 55.6 bits (128), Expect = 4e-09
Identities = 31/101 (30%), Positives = 55/101 (54%), Gaps = 6/101 (5%)
Frame = +2
Query: 5 IQNKNSSYFVEWIPNNVKTAVCDIPP---KGLKMSSTFIGNTTAIQELFKRISEQFSAMF 175
I+ + + F+ W P +++ A+ P ++S + N T+I LFKR +Q+ +
Sbjct: 340 IRERRYASFIPWGPASIQVALSKKSPYIKTNHRVSGLMLANHTSIASLFKRTLDQYDRLR 399
Query: 176 RRKAFLHWYTGEGMDEMEFNEAESN---VNDLVSEYQQYQD 289
+R AFL Y E + E + NE +S+ V DL++EY+ +D
Sbjct: 400 KRNAFLEQYKKEAIFEDDLNEFDSSRDVVADLINEYEACED 440
>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1040
Score = 27.1 bits (57), Expect = 1.8
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +2
Query: 359 D*IGSIPPIYEILLLKNMVNKYFIV 433
D I ++ PI+++L+LKN + K F+V
Sbjct: 337 DSIPNLGPIHDLLVLKNDIEKSFLV 361
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 26.6 bits (56), Expect = 2.3
Identities = 19/59 (32%), Positives = 29/59 (49%)
Frame = +2
Query: 110 IGNTTAIQELFKRISEQFSAMFRRKAFLHWYTGEGMDEMEFNEAESNVNDLVSEYQQYQ 286
+ N + L+K + E+FS +F RK L WY G+ E + N+N SE + Q
Sbjct: 1703 LNNPHLLFTLYKLL-ERFSLIFLRKCALLWYCRYGVS----FETQPNLNFQNSELSRLQ 1756
>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 512
Score = 26.6 bits (56), Expect = 2.3
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +2
Query: 254 NDLVSEYQQ--YQDATAEDDTEFDQEDMEELAQDE 352
NDL E QQ A ++D E D+E E L++DE
Sbjct: 445 NDLADETQQTLLTSALDDEDEEGDEEMEEALSEDE 479
>SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 592
Score = 26.6 bits (56), Expect = 2.3
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +3
Query: 207 ARAWTRWNSTRRRAMSMIWFRNTSSTRTRPLKMTRNL 317
A ++ W+S R+RA+ I F N S + +++ +L
Sbjct: 424 ASSFNVWSSVRKRAIETIEFFNPDSYNVKKIRLLNDL 460
>SPBC13E7.06 |msd1|mug172|spindle pole body protein
Msd1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 331
Score = 26.2 bits (55), Expect = 3.1
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = -2
Query: 255 LTLLSASLNSISSMPSPVYQCKKALRLNIAENCSDILLNS 136
LT LS +LNS+ M SP+Y+ + + E + ILL++
Sbjct: 234 LTCLSGTLNSLVEMLSPLYERPNSNPFEVCE-LNAILLDA 272
>SPAPB8E5.07c |||ribosome biogenesis protein
Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1163
Score = 26.2 bits (55), Expect = 3.1
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +3
Query: 213 AWTRWNSTRRRAMSMIWF--RNTSSTRTRPLKMTRNLTR 323
+WT NS + +++F NT TR R L++ N+ +
Sbjct: 131 SWTHGNSCKTSIYILLFFALSNTEKTRVRSLQILANILK 169
>SPAC343.08c |mrp17||mitochondrial ribosomal protein subunit
Mrp17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 109
Score = 26.2 bits (55), Expect = 3.1
Identities = 12/44 (27%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = -2
Query: 183 LRLNIAENCSDILLNSSWMAV-VLPMNVEDILRPLGGMSHTAVF 55
L +NIA+NC +L++ + V V M ++++ +P+ ++ + F
Sbjct: 22 LAMNIAKNCGRAILDNKGVVVDVESMGLKELAKPIKKLNQSYSF 65
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 26.2 bits (55), Expect = 3.1
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = +2
Query: 206 GEGMDEMEFNEAESN--VNDLVSEYQQYQDATAEDDTEFDQEDMEELAQDE 352
GE +E E + +N D + + ++A A ++ E D+ED EE +DE
Sbjct: 77 GEDGNENEVDNVNNNDKKEDEDNVEENEEEADANEEEEEDEEDDEEDEEDE 127
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.8 bits (54), Expect = 4.1
Identities = 30/92 (32%), Positives = 38/92 (41%)
Frame = +3
Query: 108 SSVTPQPSRSCLREYQSSSPLCSDARLSCTGTPARAWTRWNSTRRRAMSMIWFRNTSSTR 287
S+ TP P S SSSPL S + SCT T NST + +TSST
Sbjct: 312 STSTPPPPASTSSTGTSSSPLPSTS-TSCT-TSTSIPPTGNST-TPVTPTVPPTSTSSTS 368
Query: 288 TRPLKMTRNLTRKIWRSSLKTSTMIKSVLYLP 383
T P + + T L TST + +P
Sbjct: 369 TPPPPASTSSTGTSSSPLLSTSTSCTTSTSIP 400
>SPBC609.03 |||WD repeat protein, human IQWD1
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 25.4 bits (53), Expect = 5.4
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +2
Query: 233 NEAESNVND-LVSEYQQYQDATAEDDTEFDQEDMEELAQDE 352
NE ES+ + +VS Y + D +DD D+E + D+
Sbjct: 587 NEVESSSGENIVSMYTGHSDLNDDDDDYQDEESYSYASDDD 627
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.4 bits (53), Expect = 5.4
Identities = 13/53 (24%), Positives = 29/53 (54%), Gaps = 7/53 (13%)
Frame = +2
Query: 215 MDEMEFNEAESNVNDLVSE----YQQYQDATAEDDT---EFDQEDMEELAQDE 352
+++M+ A+ N + +E Q ++D E++T + Q+D +LA+D+
Sbjct: 4105 LEDMDMEAADENKEEADAEKDEPMQDFEDPLEENNTLDEDIQQDDFSDLAEDD 4157
Score = 25.0 bits (52), Expect = 7.2
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = +2
Query: 221 EMEFNE--AESNVNDLVSEYQQYQDATAEDDTEFDQEDMEELAQD 349
E + NE A +N +DLVS+ + + ED ++ED EE++ D
Sbjct: 4016 EQKSNEQSAANNESDLVSK--EDDNKALEDKDRQEKEDEEEMSDD 4058
>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 25.4 bits (53), Expect = 5.4
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +2
Query: 116 NTTAIQELFKRISEQFSAMFRRKAFLHWYTGEGMDE 223
N++ IQ L K I+ + +R ++ Y+G G+DE
Sbjct: 193 NSSEIQALEKSINTFTTYQYRAPEMINLYSGLGIDE 228
>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 860
Score = 25.0 bits (52), Expect = 7.2
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +2
Query: 218 DEMEFN-EAESNVNDLVSEYQQYQDATAEDDTEFDQEDMEELAQ 346
+E F+ EA +NDL +E QQ + E + + EELA+
Sbjct: 490 NEKRFDKEASGRINDLRAEQQQIMLEARQKAIERRRNEEEELAR 533
>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 941
Score = 25.0 bits (52), Expect = 7.2
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +2
Query: 233 NEAESNVNDLVSEYQ-QYQDATAEDDTEFDQEDMEELAQDEH 355
+E + +N+ V E Q E++TE ++ EE+ QDE+
Sbjct: 482 DELKQLINNAVDENALMKQKINEEEETEVIAQEAEEILQDEN 523
>SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 450
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/32 (31%), Positives = 21/32 (65%)
Frame = +2
Query: 254 NDLVSEYQQYQDATAEDDTEFDQEDMEELAQD 349
++++ E Y D +DD EFD +D+++L ++
Sbjct: 420 DEIMDEEFGYDD---DDDEEFDLDDLDDLEEE 448
>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 959
Score = 24.6 bits (51), Expect = 9.5
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +2
Query: 218 DEMEFNEAESNVNDLVSEYQQYQDATAEDDTEFDQEDMEELAQDE 352
D ++ E+ + + + + +DA E TE D++D EE+ DE
Sbjct: 659 DVLKAKESVKDSEGMFAGEEVEEDAFGE--TEMDEDDFEEIDTDE 701
>SPAC227.02c |||rRNA processing protein Rrp15 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 24.6 bits (51), Expect = 9.5
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +2
Query: 239 AESNVNDLVSEYQQYQDATAEDDTEFDQEDMEELAQDEHHD 361
+E + DL SE + YQ ++ED E ++E E D+ D
Sbjct: 35 SEEELEDLNSEDEFYQSNSSED--EIEEEVQESTIADDIAD 73
>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 639
Score = 24.6 bits (51), Expect = 9.5
Identities = 8/41 (19%), Positives = 23/41 (56%)
Frame = +2
Query: 41 IPNNVKTAVCDIPPKGLKMSSTFIGNTTAIQELFKRISEQF 163
+P V ++ ++PP+ ++ ++ G +++F+ E+F
Sbjct: 591 VPRQVFASMLNLPPEVIRRKGSWTGKKDPREDMFRSRFEKF 631
>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 24.6 bits (51), Expect = 9.5
Identities = 19/68 (27%), Positives = 30/68 (44%)
Frame = +3
Query: 72 TSRLKASRCPRHSSVTPQPSRSCLREYQSSSPLCSDARLSCTGTPARAWTRWNSTRRRAM 251
+S L +S SS TP + S SSS S + S + + +R+ +R S R +
Sbjct: 125 SSSLVSSTTSSSSSATPSTTSSSSSSSSSSSSSSSKSSSSSSKSSSRSSSRTTSHRTTSH 184
Query: 252 SMIWFRNT 275
+R T
Sbjct: 185 KSSSYRPT 192
>SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 422
Score = 24.6 bits (51), Expect = 9.5
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +2
Query: 2 SIQNKNSSYFVEWIPNNVKTAV 67
S + +S+ + WIP N KT++
Sbjct: 6 SFSSTSSASSINWIPKNTKTSI 27
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,150,385
Number of Sequences: 5004
Number of extensions: 44347
Number of successful extensions: 207
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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