Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_L05
(588 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi... 210 1e-55
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 29 0.50
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 1.2
SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar... 27 2.0
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom... 26 4.7
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ... 25 6.2
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|... 25 8.2
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 25 8.2
SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr 2||... 25 8.2
>SPAC20G8.04c |||mitochondrial electron transfer
flavoprotein-ubiquinone
oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 632
Score = 210 bits (513), Expect = 1e-55
Identities = 96/183 (52%), Positives = 129/183 (70%)
Frame = +3
Query: 6 FHSKITIFAEGCHGHLTKMVSGKYNLREKSEPQSYGIGLKELWEVKPENHKPGLVEHTIG 185
FH+ +T+FAEG HG L+K + ++NLR EPQ+YG+G+KE+W V EN + G V HT+G
Sbjct: 257 FHAPVTLFAEGAHGSLSKSIIKRFNLRGNCEPQTYGLGVKEVWRVPDENFRKGEVAHTLG 316
Query: 186 WPLDKNTYGGSFIYHLNVAEGEAPLVATGFVVGLDYSNPYLSPFREFQRFKLHPYVKPMF 365
WP+ +TYGG F+Y G+ V G VVGLDY NPY+SP EFQR K +P+ +
Sbjct: 317 WPMRNDTYGGGFMYQF----GDN-YVTVGLVVGLDYPNPYVSPALEFQRMKQNPFFAKVL 371
Query: 366 EGGTRIAYGARALVEGGWQCLPVPVFPGGMLAGDTAGYLNVPRIKGTHNAMKSGMLAAEA 545
+GG + Y ARAL EGG+Q +P VFPGG L G +AG++NV +IKGTH AMKSG++AA+A
Sbjct: 372 KGGKCLEYAARALNEGGYQAIPKLVFPGGALIGCSAGFVNVAKIKGTHTAMKSGIVAADA 431
Query: 546 AMD 554
+D
Sbjct: 432 IVD 434
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 29.1 bits (62), Expect = 0.50
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = -3
Query: 505 VPLIRGTLR*PAVSPASIPPGNTGTGKHCQPPSTSARAPYAIRVPPSNMGFT*GCSL-NL 329
+ +I T R + PA + PG PPS ARA +R+ +M T G L ++
Sbjct: 286 IKVIMATNRIDILDPALLRPGRIDRKIEFPPPSAEARAE-ILRIHSRSMNLTRGIDLKSI 344
Query: 328 WNSLNG 311
+NG
Sbjct: 345 AEKMNG 350
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.9 bits (59), Expect = 1.2
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -3
Query: 475 PAVSPASIPPGNTGTGKHCQPPSTSARAPYAIRVPPS 365
P +P S+PP + PPS AP A +PPS
Sbjct: 416 PVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPS 452
>SPAC823.11 |||sphingosine-1-phosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 27.1 bits (57), Expect = 2.0
Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +3
Query: 279 VGLDYSNPYLSPF-REFQRFKLHPYVKPMFEGGTRIAYGARALVEGGW 419
+G+ + N Y + F +E RF+L + P+ TR+ Y ++ W
Sbjct: 17 LGIQHVNFYSNAFGKESLRFQLRELILPIVRKETRLLYKIQSFFRNPW 64
>SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1466
Score = 25.8 bits (54), Expect = 4.7
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +3
Query: 264 ATGFVVGLDYSNPYLSPFREFQRF 335
A G ++G+ +P+L P+ E Q F
Sbjct: 1089 AVGLIIGVGSFSPFLIPYEESQTF 1112
>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
2|||Manual
Length = 962
Score = 25.4 bits (53), Expect = 6.2
Identities = 16/67 (23%), Positives = 32/67 (47%)
Frame = +3
Query: 51 LTKMVSGKYNLREKSEPQSYGIGLKELWEVKPENHKPGLVEHTIGWPLDKNTYGGSFIYH 230
+T+M+ Y RE+ P + LK+++ + E+ KP ++ I + L +Y+
Sbjct: 490 VTEMLVSCYENRERI-PNELPMVLKQIYYSRSESFKPSAIKEFIEYFLCDQLMNCLSVYY 548
Query: 231 LNVAEGE 251
EG+
Sbjct: 549 SKYFEGK 555
>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
Abc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1469
Score = 25.0 bits (52), Expect = 8.2
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Frame = -3
Query: 208 YVFLSKGHPIVCSTNPGLWFSGF-TSHSSFKPIPYDCGSLFSLRLYLPDTIFVR*P*QPS 32
Y F HP + S +P LWF F T +F P LF+ R++ P +F QPS
Sbjct: 176 YPFFFVDHPPLSSYSPFLWFYFFITIVGNFIP-------LFTPRVWYP--LFPEDNYQPS 226
Query: 31 ANIVIFEWN 5
A V +N
Sbjct: 227 AEQVCSMFN 235
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 25.0 bits (52), Expect = 8.2
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -3
Query: 475 PAVSPASIPPGNTGTGKHCQPPSTSARAPYAIRVPPS 365
P V+PA P T KH PP R+ + +PP+
Sbjct: 725 PQVTPAPPTPAPTPAVKH-HPPPPPVRSSISPSMPPA 760
>SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 525
Score = 25.0 bits (52), Expect = 8.2
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -2
Query: 386 RDSGAAFKHGLHIGM*FKPLELSERAQ 306
RDS AA+ H LH+ + LS+R +
Sbjct: 81 RDSEAAYVHDLHVAQRYYADRLSDRVK 107
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,634,382
Number of Sequences: 5004
Number of extensions: 59107
Number of successful extensions: 154
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -