Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_L05
         (588 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13458| Best HMM Match : No HMM Matches (HMM E-Value=.)              98   4e-21
SB_13461| Best HMM Match : No HMM Matches (HMM E-Value=.)              66   2e-11
SB_35134| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_46420| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_12584| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_37182| Best HMM Match : DUF225 (HMM E-Value=1)                      27   8.6  

>SB_13458| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 318

 Score = 98.3 bits (234), Expect = 4e-21
 Identities = 44/75 (58%), Positives = 53/75 (70%), Gaps = 11/75 (14%)
 Frame = +3

Query: 3   EFHSKITIFAEGCHGHLTKMVSGKYNLREKSEPQSYGIGLKE-----------LWEVKPE 149
           E H+K+T+F+EGCHGHL K +  ++NLRE  + QSYGIGLKE           LWEV PE
Sbjct: 122 ELHAKVTLFSEGCHGHLAKGLYKRFNLRENCDDQSYGIGLKEENDFAITLCSKLWEVAPE 181

Query: 150 NHKPGLVEHTIGWPL 194
            HKPG VEHT+GWPL
Sbjct: 182 KHKPGTVEHTVGWPL 196


>SB_13461| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 250

 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 30/49 (61%), Positives = 37/49 (75%)
 Frame = +3

Query: 420 QCLPVPVFPGGMLAGDTAGYLNVPRIKGTHNAMKSGMLAAEAAMDLILS 566
           Q +P  VFPGG L G + G+LNVP+IKGTHNAMKS M+ AEAA + + S
Sbjct: 5   QSIPKLVFPGGALMGCSPGFLNVPKIKGTHNAMKSAMVCAEAAFEALTS 53


>SB_35134| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 160

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 22/57 (38%), Positives = 25/57 (43%)
 Frame = +3

Query: 342 HPYVKPMFEGGTRIAYGARALVEGGWQCLPVPVFPGGMLAGDTAGYLNVPRIKGTHN 512
           H Y  P   G TR+    R  V+      P P+FP  ML    A Y N PRI G  N
Sbjct: 92  HTYGLPNRYGSTRLL---RKAVKN--PKAPTPIFPANMLYNTIARYSN-PRINGEDN 142


>SB_46420| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 238

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +3

Query: 165 LVEHTIGWPLDKNTYGGSFIYHLNVAEG--EAPLVATGFVVGLDYSNP 302
           L   T G+P D + Y  +++YH+++  G    P  A G  +    ++P
Sbjct: 50  LASDTTGYPRDDHKYQVAYLYHISMPMGLRARPAAALGSAINFPINSP 97


>SB_12584| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 692

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 19/41 (46%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
 Frame = -2

Query: 464 AGQHP---AGEHRHRQALPTAFH*RPSSV-RDSGAAFKHGL 354
           AG+ P   AG HRH  AL T F   P+S  R S + F  GL
Sbjct: 495 AGKRPCSDAGRHRHSMALNTKFAILPTSPGRSSPSFFSDGL 535


>SB_37182| Best HMM Match : DUF225 (HMM E-Value=1)
          Length = 1282

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
 Frame = +1

Query: 424 ACRCRCSPAGCWPATQPVTL---TCHVSKAHITL*KAVC 531
           AC CRC P  C     P ++     ++S+AH+ +   VC
Sbjct: 152 ACSCRCFPITCSCRCVPQSMLMSMSYLSRAHVDVFPIVC 190


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,518,542
Number of Sequences: 59808
Number of extensions: 503369
Number of successful extensions: 1132
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1035
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1130
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1422302661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)