Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_L05
         (588 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00048-15|AAB53835.2|  597|Caenorhabditis elegans Lethal protein...   245   2e-65
Z68753-3|CAA92988.3|  984|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AL031633-6|CAA21014.3|  225|Caenorhabditis elegans Hypothetical ...    29   3.2  
Z71262-2|CAA95809.1|  189|Caenorhabditis elegans Hypothetical pr...    28   4.3  
U44759-1|AAA86906.1|  405|Caenorhabditis elegans troponin T prot...    27   7.5  
U43282-4|AAA83615.1|  405|Caenorhabditis elegans Muscle position...    27   7.5  
U23523-11|AAP68942.2|  324|Caenorhabditis elegans Troponin t pro...    27   7.5  
U23523-10|AAP68941.1|  428|Caenorhabditis elegans Troponin t pro...    27   7.5  
AF040646-1|AAK31537.1|  530|Caenorhabditis elegans Collagen prot...    27   7.5  
Z73969-4|CAA98235.2|  428|Caenorhabditis elegans Hypothetical pr...    27   9.9  
U97192-2|AAO38678.1|  622|Caenorhabditis elegans Hypothetical pr...    27   9.9  
U97192-1|AAB52434.2|  986|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>U00048-15|AAB53835.2|  597|Caenorhabditis elegans Lethal protein
           721 protein.
          Length = 597

 Score =  245 bits (600), Expect = 2e-65
 Identities = 113/191 (59%), Positives = 145/191 (75%), Gaps = 1/191 (0%)
 Frame = +3

Query: 3   EFHSKITIFAEGCHGHLTKMVSGKYNLREKSEPQSYGIGLKELWEVKPENHKPGLVEHTI 182
           EFH+K TIFAEGC GHL+K V  K++LR  +   +YGIGLKELWE+ P  H+PG VEHT+
Sbjct: 218 EFHAKCTIFAEGCRGHLSKQVLDKFDLR--THAMTYGIGLKELWEIDPAKHRPGYVEHTM 275

Query: 183 GWPLDKNTYGGSFIYHLNVAEGEAPLVATGFVVGLDYSNPYLSPFREFQRFKLHPYVKPM 362
           GWPL+ + YGGSF+YH+   +G+ PLV+ GFVV LDY+NP L+P++EFQ++K HP +   
Sbjct: 276 GWPLNVDQYGGSFLYHIE-DQGQ-PLVSVGFVVALDYANPNLNPYKEFQKYKTHPSISKQ 333

Query: 363 FEGGTRIAYGARALVEGGWQCLPVPVFPGGMLAGDTAGYLNVPRIKGTHNAMKSGMLAAE 542
            EGG RI YGARAL EGG+Q +P   FPGG L G +AG+LNV ++KGTHNAMKSGM+AAE
Sbjct: 334 LEGGKRIGYGARALNEGGFQSIPKLHFPGGCLVGCSAGFLNVAKLKGTHNAMKSGMVAAE 393

Query: 543 AAM-DLILSGE 572
           +   D+   GE
Sbjct: 394 SIFEDIQQKGE 404


>Z68753-3|CAA92988.3|  984|Caenorhabditis elegans Hypothetical
           protein ZC518.2 protein.
          Length = 984

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -3

Query: 475 PAVSPASIPPGNTGTGKHCQPPSTSARAPYAIRVPPSNMG 356
           P+ SPA+ P  N   G H  PP   +R P A   PP ++G
Sbjct: 107 PSFSPATQPSMN---GHHAPPPPAVSRPP-AFPTPPPSVG 142


>AL031633-6|CAA21014.3|  225|Caenorhabditis elegans Hypothetical
           protein Y39A1A.8 protein.
          Length = 225

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +3

Query: 168 VEHTIGWPLDKNTYGGSFIYHLNVAEGEAPLVATGFVV 281
           V H+    L K TY G++   LN+    APL   G VV
Sbjct: 117 VAHSTNSHLTKTTYVGNYCIFLNICSVAAPLFDIGKVV 154


>Z71262-2|CAA95809.1|  189|Caenorhabditis elegans Hypothetical
           protein F22D6.2 protein.
          Length = 189

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -1

Query: 180 SCAPLTLVYGFQVSLPIALSNRYHMIVVRFSL*GYICR 67
           S AP T+     V +P+  +NR HM   R  L G+ CR
Sbjct: 110 STAPTTITV--DVPVPVKKANRCHMCKKRVGLTGFSCR 145


>U44759-1|AAA86906.1|  405|Caenorhabditis elegans troponin T
           protein.
          Length = 405

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +3

Query: 36  GCHGHLTKMVSGKYNLREKSEPQSYGIGLKELWE 137
           G H  + K+ + KY+L ++ E Q Y   +KEL E
Sbjct: 238 GLHARIVKLEAEKYDLEKRRERQDY--DMKELHE 269


>U43282-4|AAA83615.1|  405|Caenorhabditis elegans Muscle positioning
           protein 2 protein.
          Length = 405

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +3

Query: 36  GCHGHLTKMVSGKYNLREKSEPQSYGIGLKELWE 137
           G H  + K+ + KY+L ++ E Q Y   +KEL E
Sbjct: 238 GLHARIVKLEAEKYDLEKRRERQDY--DMKELHE 269


>U23523-11|AAP68942.2|  324|Caenorhabditis elegans Troponin t
           protein 2, isoform b protein.
          Length = 324

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 33  EGCHGHLTKMVSGKYNLREKSEPQSYGIGLKELWE 137
           +G H  + K+   KY+L ++ E Q Y   LKEL E
Sbjct: 142 KGIHARIVKLEGEKYDLEKRRERQEY--DLKELNE 174


>U23523-10|AAP68941.1|  428|Caenorhabditis elegans Troponin t
           protein 2, isoform a protein.
          Length = 428

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 33  EGCHGHLTKMVSGKYNLREKSEPQSYGIGLKELWE 137
           +G H  + K+   KY+L ++ E Q Y   LKEL E
Sbjct: 246 KGIHARIVKLEGEKYDLEKRRERQEY--DLKELNE 278


>AF040646-1|AAK31537.1|  530|Caenorhabditis elegans Collagen protein
           70 protein.
          Length = 530

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 463 PASIPPGNTGTGKHCQPPSTSARAPYAIRVPP 368
           PA+ PPG+  T ++   P  +  AP+   VPP
Sbjct: 230 PATFPPGSVSTVRY--TPGPTPPAPWTYTVPP 259


>Z73969-4|CAA98235.2|  428|Caenorhabditis elegans Hypothetical
           protein C12D8.5 protein.
          Length = 428

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = +3

Query: 153 HKPGLVEHTIGWPLDKNTYGGSFIYHLNVAEGEAPLVATGF-VVGLDYSNP 302
           H  G  EH +   + +    G+ I HLN     AP V  G  ++  D S+P
Sbjct: 212 HLGGRTEHEVMCHIQEIPENGADIAHLNYLHKSAPPVTKGSDIIKTDLSDP 262


>U97192-2|AAO38678.1|  622|Caenorhabditis elegans Hypothetical
           protein C01F4.2b protein.
          Length = 622

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 16/77 (20%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
 Frame = +3

Query: 357 PMFEGGTRIA-YGARALVEGGWQCLPVPVFPGGMLAGDTAGYLNVPRIKGTHNAMKSGML 533
           P      R+A + +R++ +  W+      F G   +      L +PR+   H ++ S  +
Sbjct: 109 PQMSTSRRLAGFASRSIRKSQWRLFKHRTFFGSQRSSMKKNQLQLPRLTLRHPSIDSSAM 168

Query: 534 AAEAAMDLILSGEATHE 584
             +  +D   SGE + +
Sbjct: 169 PLQLDVDENASGEGSDD 185


>U97192-1|AAB52434.2|  986|Caenorhabditis elegans Hypothetical
           protein C01F4.2a protein.
          Length = 986

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 16/77 (20%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
 Frame = +3

Query: 357 PMFEGGTRIA-YGARALVEGGWQCLPVPVFPGGMLAGDTAGYLNVPRIKGTHNAMKSGML 533
           P      R+A + +R++ +  W+      F G   +      L +PR+   H ++ S  +
Sbjct: 109 PQMSTSRRLAGFASRSIRKSQWRLFKHRTFFGSQRSSMKKNQLQLPRLTLRHPSIDSSAM 168

Query: 534 AAEAAMDLILSGEATHE 584
             +  +D   SGE + +
Sbjct: 169 PLQLDVDENASGEGSDD 185


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,762,783
Number of Sequences: 27780
Number of extensions: 344826
Number of successful extensions: 1012
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1009
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)