Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_L05
         (588 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g43400.1 68415.m05394 electron transfer flavoprotein-ubiquino...   229   1e-60
At1g74470.1 68414.m08627 geranylgeranyl reductase identical to g...    29   1.7  
At5g08230.1 68418.m00965 PWWP domain-containing protein putative...    29   3.0  
At4g00330.1 68417.m00042 protein kinase family protein contains ...    29   3.0  
At5g17330.1 68418.m02030 glutamate decarboxylase 1 (GAD 1) sp|Q4...    28   5.3  
At5g63930.1 68418.m08028 leucine-rich repeat transmembrane prote...    27   9.3  
At5g48740.1 68418.m06032 leucine-rich repeat family protein / pr...    27   9.3  
At4g11430.1 68417.m01841 hydroxyproline-rich glycoprotein family...    27   9.3  
At3g53840.1 68416.m05948 protein kinase family protein contains ...    27   9.3  
At3g20910.1 68416.m02643 CCAAT-binding transcription factor (CBF...    27   9.3  
At2g10940.2 68415.m01168 protease inhibitor/seed storage/lipid t...    27   9.3  
At2g10940.1 68415.m01167 protease inhibitor/seed storage/lipid t...    27   9.3  
At1g72180.1 68414.m08346 leucine-rich repeat transmembrane prote...    27   9.3  
At1g21400.1 68414.m02678 2-oxoisovalerate dehydrogenase, putativ...    27   9.3  
At1g12040.1 68414.m01390 leucine-rich repeat family protein / ex...    25   9.8  

>At2g43400.1 68415.m05394 electron transfer flavoprotein-ubiquinone
           oxidoreductase family protein contains Pfam profile:
           PF05187 Electron transfer flavoprotein-ubiquinone 
           oxidoreductase
          Length = 633

 Score =  229 bits (560), Expect = 1e-60
 Identities = 103/191 (53%), Positives = 137/191 (71%), Gaps = 2/191 (1%)
 Frame = +3

Query: 3   EFHSKITIFAEGCHGHLTKMVSGKYNLREK--SEPQSYGIGLKELWEVKPENHKPGLVEH 176
           +   ++T+FAEGC G L++ +  KY LRE+  ++ Q+Y +G+KE+WE+    H PG V H
Sbjct: 263 DIKGRVTLFAEGCRGSLSERIIKKYKLREEVNAQHQTYALGIKEVWEIDESKHNPGEVIH 322

Query: 177 TIGWPLDKNTYGGSFIYHLNVAEGEAPLVATGFVVGLDYSNPYLSPFREFQRFKLHPYVK 356
           T+GWPLD  TYGGSF+YH+N  +     VA G VV L+Y NP+L+P+ EFQ+ K HP +K
Sbjct: 323 TLGWPLDPKTYGGSFLYHMNDRQ-----VALGLVVALNYHNPFLNPYEEFQKLKHHPAIK 377

Query: 357 PMFEGGTRIAYGARALVEGGWQCLPVPVFPGGMLAGDTAGYLNVPRIKGTHNAMKSGMLA 536
            + EGGT + YGAR L EGG+Q +P PVFPGG + G +AG+LNVP+IKGTH AMKSGMLA
Sbjct: 378 GILEGGTVLQYGARTLNEGGFQSIPYPVFPGGAIIGCSAGFLNVPKIKGTHTAMKSGMLA 437

Query: 537 AEAAMDLILSG 569
           AEAA   +  G
Sbjct: 438 AEAAFGALHEG 448


>At1g74470.1 68414.m08627 geranylgeranyl reductase identical to
           geranylgeranyl reductase GB:Y14044 [Arabidopsis
           thaliana] (involvement: chlorophyll, the tocopherol and
           the phylloquinone pathways Eur J Biochem 1998 Jan
           15;251(1-2):413-7)
          Length = 467

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +3

Query: 456 LAGDTAGYLNVPRIKGTHNAMKSGMLAAEAAMD 554
           L GD AGY+     +G + A KSG + AEA ++
Sbjct: 330 LVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVE 362


>At5g08230.1 68418.m00965 PWWP domain-containing protein putative
            transcription factor (HUA2) - Arabidopsis thaliana,
            EMBL:AF116556
          Length = 1445

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -3

Query: 475  PAVSPASIPPGNTGTGKHCQPPSTSARAP-YAIRVPPSNM 359
            P  SP  + P    +  HC PP T+  AP  +I +PPS++
Sbjct: 1146 PPSSPPQLAPAPPPSD-HCLPPPTAPLAPAQSIALPPSSI 1184


>At4g00330.1 68417.m00042 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 411

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
 Frame = +3

Query: 33  EGCHGHLTKMVSGKYNLREKSEPQSYGIGLKELWE-VKPENHKPGLVEH-TIGWPLDKNT 206
           +G  G+L       Y L EKS+  S+G+ L EL    +P     G  E  TI W + K T
Sbjct: 287 KGTAGYLDPEYLTTYQLTEKSDVYSFGVLLVELLTGRRPIELSRGQKERITIRWAIKKFT 346

Query: 207 YG 212
            G
Sbjct: 347 SG 348


>At5g17330.1 68418.m02030 glutamate decarboxylase 1 (GAD 1)
           sp|Q42521
          Length = 502

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
 Frame = +3

Query: 138 VKPENHKPGLVEHTIGWPL--DKNTYGGSFIYHLNVAEGEAPLVATGFVVG 284
           +    HK GLV   IGW +  +K       I+H+N    + P     F  G
Sbjct: 271 INVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKG 321


>At5g63930.1 68418.m08028 leucine-rich repeat transmembrane protein
            kinase, putative 
          Length = 1102

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +3

Query: 9    HSKITIFAEGCHGHLTKMVSGKYNLREKSEPQSYGIGLKEL 131
            HSK      G +G++    +    + EKS+  SYG+ L EL
Sbjct: 961  HSKSMSAIAGSYGYIAPEYAYTMKVTEKSDIYSYGVVLLEL 1001


>At5g48740.1 68418.m06032 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 895

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +3

Query: 12  SKITIFAEGCHGHLTKMVSGKYNLREKSEPQSYGIGLKEL 131
           S IT   +G  G+L         L EKS+  S+G+ L EL
Sbjct: 763 SHITTVVKGTAGYLDPEYYSTLQLTEKSDVYSFGVVLLEL 802


>At4g11430.1 68417.m01841 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965; related to hydroxyproline-rich
           glycoprotein [Phaseolus vulgaris] gi|169349|gb|AAA33765
          Length = 219

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
 Frame = -3

Query: 463 PASIPPGNTGTG-KHCQPPS---TSARAPYAIRVPP 368
           P SIP   T TG +HC+PPS   T+    + +R PP
Sbjct: 65  PPSIPV-TTNTGHRHCRPPSNPATTNSGHHQLRPPP 99


>At3g53840.1 68416.m05948 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 639

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +3

Query: 12  SKITIFAEGCHGHLTKMVSGKYNLREKSEPQSYGIGLKELWEVK 143
           S +T  A+G  G+L       + L +KS+  S+G+ L EL   K
Sbjct: 514 SHVTTCAQGTLGYLDPEYYLNFQLTDKSDVYSFGVVLFELLTCK 557


>At3g20910.1 68416.m02643 CCAAT-binding transcription factor
           (CBF-B/NF-YA) family protein contains Pfam profile:
           PF02045 CCAAT-binding transcription factor (CBF-B/NF-YA)
           subunit B
          Length = 303

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
 Frame = +3

Query: 141 KPENHKPGLVEHTIGWPLDKNTYGGSFIYHLNVAEGEAPLVATGFVV--GLDYSNPYLSP 314
           +P  H P LV HT+GW    N Y   +   +  A G  PL   GFV   G+ +S   L P
Sbjct: 107 QPPPH-PQLVGHTVGW-ASSNPYQDPYYAGVMGAYGHHPL---GFVPYGGMPHSRMPLPP 161


>At2g10940.2 68415.m01168 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein similar to
           proline-rich cell wall protein [Medicago sativa]
           GI:3818416; contains Pfam profile PF00234 Protease
           inhibitor/seed storage/LTP family
          Length = 291

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -3

Query: 475 PAVSPASIPPGNTGTGKHCQPPSTSARAP 389
           P + P + PP  TG GK C PP  S + P
Sbjct: 174 PILPPGTTPPA-TG-GKDCPPPPGSVKPP 200


>At2g10940.1 68415.m01167 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein similar to
           proline-rich cell wall protein [Medicago sativa]
           GI:3818416; contains Pfam profile PF00234 Protease
           inhibitor/seed storage/LTP family
          Length = 291

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -3

Query: 475 PAVSPASIPPGNTGTGKHCQPPSTSARAP 389
           P + P + PP  TG GK C PP  S + P
Sbjct: 174 PILPPGTTPPA-TG-GKDCPPPPGSVKPP 200


>At1g72180.1 68414.m08346 leucine-rich repeat transmembrane protein
           kinase, putative similar to GI:3641252 from [Malus x
           domestica] (Plant Mol. Biol. 40 (6), 945-957 (1999))
          Length = 977

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 36  GCHGHLTKMVSGKYNLREKSEPQSYGIGLKEL 131
           G HG++   ++  +   EKS+  S+G+ L EL
Sbjct: 850 GTHGYMAPELAYSFKATEKSDVYSFGVVLLEL 881


>At1g21400.1 68414.m02678 2-oxoisovalerate dehydrogenase, putative /
           3-methyl-2-oxobutanoate dehydrogenase, putative /
           branched-chain alpha-keto acid dehydrogenase E1 alpha
           subunit, putative similar to branched-chain alpha-keto
           acid dehydrogenase E1-alpha subunit [Gallus gallus]
           GI:12964598; contains Pfam profile PF00676:
           Dehydrogenase E1 component
          Length = 472

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 12/38 (31%), Positives = 26/38 (68%)
 Frame = +3

Query: 51  LTKMVSGKYNLREKSEPQSYGIGLKELWEVKPENHKPG 164
           LT++ +  Y+++ K+  +   +GLKEL + +P+++ PG
Sbjct: 433 LTELFNDVYDVKPKNLEEQE-LGLKELVKKQPQDYPPG 469


>At1g12040.1 68414.m01390 leucine-rich repeat family protein /
           extensin family protein (LRX1) similar to extensin-like
           protein [Lycopersicon esculentum]
           gi|5917664|gb|AAD55979; contains leucine-rich repeats,
           Pfam:PF00560; contains proline rich extensin domains,
           INTERPRO:IPR002965
          Length = 744

 Score = 24.6 bits (51), Expect(2) = 9.8
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -3

Query: 289 SSPTTKPVATSGASPSATFRWYINEPPYVFLSKGHPIVCSTNP 161
           SSP   P   S + P   + +    PPYV+ S   P V S+ P
Sbjct: 482 SSPPPPPYVYS-SPPPPPYVYSSPPPPYVYSSPPPPYVYSSPP 523



 Score = 20.6 bits (41), Expect(2) = 9.8
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = -3

Query: 415 PPSTSARAPYAIRVPP 368
           PPS S   PY    PP
Sbjct: 461 PPSPSPPPPYVYSSPP 476


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,110,308
Number of Sequences: 28952
Number of extensions: 333134
Number of successful extensions: 1026
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1023
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1161268208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)