Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_L04
(388 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0216 + 15804110-15804284,15804341-15804351 30 0.74
06_03_0795 - 24683023-24683155,24685853-24686057,24686275-246864... 30 0.74
03_05_0517 - 25118232-25118730,25119002-25119273 28 2.2
03_02_0269 + 7001891-7002212,7003598-7004037 28 2.2
12_02_0219 + 15822050-15824896 27 3.9
11_04_0321 - 16359390-16359539,16359674-16359746,16360448-163608... 27 3.9
09_02_0511 - 10079180-10079355,10079656-10079722,10080144-100801... 27 6.9
07_03_0202 + 15131001-15131047,15131488-15131754,15131913-151319... 27 6.9
03_02_0260 - 6924532-6924757,6925443-6925546,6925729-6926007,692... 27 6.9
01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008 27 6.9
12_01_0014 + 105422-105520,105598-105725,105939-106101,106198-10... 26 9.1
07_01_0601 + 4464745-4465010,4465274-4466582 26 9.1
03_02_0259 - 6920472-6920579,6920744-6921022,6921115-6921390,692... 26 9.1
02_05_0005 - 24890239-24891419,24891524-24891694,24891810-24892704 26 9.1
02_01_0138 + 999809-999821,1000456-1001341,1001424-1003221,10037... 26 9.1
>12_02_0216 + 15804110-15804284,15804341-15804351
Length = 61
Score = 29.9 bits (64), Expect = 0.74
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +2
Query: 110 SGVPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAF 232
SG P+ +H V FF+ SN SGNY + G F
Sbjct: 12 SGSPAPPYKNHTVAGADGWFFNATSNTTSGNYSDWAAGETF 52
>06_03_0795 -
24683023-24683155,24685853-24686057,24686275-24686443,
24686590-24686775,24686916-24687124,24687197-24687362
Length = 355
Score = 29.9 bits (64), Expect = 0.74
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -3
Query: 137 HYCRPMEHHYCPPRELCLRQPW 72
HYCR +E+ YC + L R+ W
Sbjct: 181 HYCRSIENWYCLSKTLAEREAW 202
>03_05_0517 - 25118232-25118730,25119002-25119273
Length = 256
Score = 28.3 bits (60), Expect = 2.2
Identities = 12/37 (32%), Positives = 16/37 (43%)
Frame = +2
Query: 161 DPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRY 271
D FF++ P GN T P VD P P + +
Sbjct: 37 DWFFTRKGESPQGNISKEETAPTGVDVTDPGRPGRAF 73
>03_02_0269 + 7001891-7002212,7003598-7004037
Length = 253
Score = 28.3 bits (60), Expect = 2.2
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -3
Query: 296 SHHGREGCRIAWVDNWDD*NRR 231
+ H R+ R+AW D W D +R+
Sbjct: 62 TEHARQRMRVAWADGWVDGSRK 83
>12_02_0219 + 15822050-15824896
Length = 948
Score = 27.5 bits (58), Expect = 3.9
Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +3
Query: 3 NSADNSDTIRQ*KLSC-FSSSPYWPWLPQTEFTWWTIVV 116
++ D D +R+ ++ C F+ P WPWL ++ T+V+
Sbjct: 266 STLDFGDPLRKHEMHCRFTQGPPWPWLAVAS-SYGTLVI 303
>11_04_0321 -
16359390-16359539,16359674-16359746,16360448-16360845,
16360919-16362673,16362751-16362861,16363745-16363962,
16364088-16364196
Length = 937
Score = 27.5 bits (58), Expect = 3.9
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +2
Query: 254 YPPKRYDNPLARGGK 298
YPPKRY NP+ G+
Sbjct: 859 YPPKRYSNPVGPAGR 873
>09_02_0511 -
10079180-10079355,10079656-10079722,10080144-10080181,
10080255-10080336
Length = 120
Score = 26.6 bits (56), Expect = 6.9
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 98 VVDNSGVPSDGNSDHVVIANPDPFFSQPSNG 190
+++N+G S GN ++ N PFF SNG
Sbjct: 57 ILNNAGATSKGNYALILPVNEFPFFLVYSNG 87
>07_03_0202 +
15131001-15131047,15131488-15131754,15131913-15131940,
15132120-15132179,15132570-15132696,15132907-15133724
Length = 448
Score = 26.6 bits (56), Expect = 6.9
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Frame = +2
Query: 86 NRVHVVDNSGVPSDGNSDHVVIANPDPFFSQPSNGP----SGNYEPISTGPAFVDFN 244
NR+HV+D + V I+ PDP +P + P S P + +F +FN
Sbjct: 19 NRLHVLDPPCPSPVAAGEKVSISAPDPISHKPVSRPKVPVSDGNAPNAISKSFFNFN 75
>03_02_0260 -
6924532-6924757,6925443-6925546,6925729-6926007,
6926093-6926368,6926460-6926678,6926758-6926926,
6927208-6927382,6927489-6927600,6929566-6929820
Length = 604
Score = 26.6 bits (56), Expect = 6.9
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 98 VVDNSGVPSDGNSDHVVIANPDPFFSQP 181
V++N +P N HVV+ANP P P
Sbjct: 248 VLENCQLPH-ANHGHVVLANPSPILFYP 274
>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
Length = 580
Score = 26.6 bits (56), Expect = 6.9
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Frame = +2
Query: 110 SGVPSD-GNSDHVVIANPDPFF-SQPSNGPSGNYEPIST 220
SG PS GN+ + ++P PF S PS+G SGNY + T
Sbjct: 464 SGSPSHRGNAG--MKSSPSPFAPSGPSSGGSGNYGRLPT 500
>12_01_0014 +
105422-105520,105598-105725,105939-106101,106198-106310,
106787-106825,107026-107109,107193-107241,107331-107422,
107680-107809,107906-107982,108058-109676,110024-110221,
110287-110825
Length = 1109
Score = 26.2 bits (55), Expect = 9.1
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 6/39 (15%)
Frame = +2
Query: 164 PFFSQPSNGPSG------NYEPISTGPAFVDFNHPNYPP 262
P FS P+ P+G ++E ++ P F N PN PP
Sbjct: 875 PGFSAPARVPTGFSSGFSSHEGLNPPPGFSSHNGPNPPP 913
>07_01_0601 + 4464745-4465010,4465274-4466582
Length = 524
Score = 26.2 bits (55), Expect = 9.1
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 134 SDHVVIANPDPFFSQPSNGPSGNYEPISTGPA 229
SDH V+ P PF P++ + + PI T PA
Sbjct: 50 SDHFVLT-PPPFQITPTSIQNSTWLPIPTSPA 80
>03_02_0259 -
6920472-6920579,6920744-6921022,6921115-6921390,
6921473-6921691,6921795-6921963,6922248-6922422,
6922490-6922601,6923343-6923573
Length = 522
Score = 26.2 bits (55), Expect = 9.1
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 98 VVDNSGVPSDGNSDHVVIANPDPFFSQP 181
V++N +P N HV++ANP P P
Sbjct: 240 VLENCQLPHP-NHGHVILANPSPILCYP 266
>02_05_0005 - 24890239-24891419,24891524-24891694,24891810-24892704
Length = 748
Score = 26.2 bits (55), Expect = 9.1
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = -1
Query: 292 TTGERVVVSLGWIIGMIEIDERRSSAYGFIISAR 191
+TG +V + L W++G E R +A G++ +R
Sbjct: 233 STGGKVPLVLDWVVGKKTCREARRNATGYMCVSR 266
>02_01_0138 +
999809-999821,1000456-1001341,1001424-1003221,
1003716-1003805,1004034-1004111,1004513-1004518,
1004849-1004958,1005174-1005369
Length = 1058
Score = 26.2 bits (55), Expect = 9.1
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -1
Query: 133 IAVRWNTTIVHHVNSV 86
IA RW T ++HHVNS+
Sbjct: 507 IAGRWLTQMLHHVNSL 522
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,599,745
Number of Sequences: 37544
Number of extensions: 215847
Number of successful extensions: 553
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 648814968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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