Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_L02
         (569 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.04c |mmf1|pmf1|YjgF family protein Mmf1|Schizosaccharomy...    95   6e-21
SPAC1039.10 |mmf2|hpm1, SPAC922.01|homologous Pmf1p factor 1|Sch...    87   1e-18
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    35   0.010
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy...    29   0.36 
SPAC5H10.06c |adh4||alcohol dehydrogenase Adh4|Schizosaccharomyc...    27   1.9  
SPBC342.04 |||adhesion regulating molecule protein homolog|Schiz...    26   4.5  
SPAC2E1P5.02c |mug109||sequence orphan|Schizosaccharomyces pombe...    25   5.9  
SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|c...    25   7.8  

>SPBC2G2.04c |mmf1|pmf1|YjgF family protein Mmf1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 162

 Score = 95.1 bits (226), Expect = 6e-21
 Identities = 52/125 (41%), Positives = 75/125 (60%), Gaps = 3/125 (2%)
 Frame = +3

Query: 48  KTIVTSPDVYKPVGPYSQAILSDKTLYISGVLGMDRDAQLVSGGVGAQTRQVLENLKHVV 227
           KT + SP +    GPY+QAI ++  +Y SG + +  + +++ G VG QTRQ L NL+ V+
Sbjct: 39  KTPINSPKL-SSAGPYNQAIKANGVIYCSGQIPV-ANGKVIEGTVGDQTRQCLLNLQEVL 96

Query: 228 EAGGGSLESVIKTTILLANMDDFQCVNQIYAEYFPKNCPARATYQVTKLPLN---AAVEI 398
              G SL  ++K  I LA+MDDF  VN++Y E  P   PAR+   V  +PL+     +EI
Sbjct: 97  TEAGSSLNKIVKVNIFLADMDDFAAVNKVYTEVLPDPKPARSCVAVKTVPLSTQGVKIEI 156

Query: 399 EAIAL 413
           E IAL
Sbjct: 157 ECIAL 161


>SPAC1039.10 |mmf2|hpm1, SPAC922.01|homologous Pmf1p factor
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 126

 Score = 87.4 bits (207), Expect = 1e-18
 Identities = 44/111 (39%), Positives = 64/111 (57%), Gaps = 3/111 (2%)
 Frame = +3

Query: 87  GPYSQAILSDKTLYISGVLGMDRDAQLVSGGVGAQTRQVLENLKHVVEAGGGSLESVIKT 266
           GPY+QA+ S   ++ SG   + +D   V G +  QTR  +ENL  V+   G SLE ++K 
Sbjct: 15  GPYNQAVKSGGLIFCSGQAAV-KDGNFVPGTIQEQTRLTIENLAEVLRVAGSSLEKLVKV 73

Query: 267 TILLANMDDFQCVNQIYAEYFPKNCPARATYQVTKLPLNA---AVEIEAIA 410
            I L ++DDF  +N++Y E  P   PAR T    K+PL++    +EIE IA
Sbjct: 74  NIFLTDIDDFAAMNEVYKEMLPDPMPARTTVAAGKIPLSSKGGKIEIECIA 124


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 34.7 bits (76), Expect = 0.010
 Identities = 30/108 (27%), Positives = 54/108 (50%), Gaps = 4/108 (3%)
 Frame = +3

Query: 84  VGPYSQAILSDKTLYISGVLGMDRDAQLVSGGVGAQTRQVLENLKHVVE-AGGGSLESVI 260
           +GPYSQ+I ++  ++ISG +G+      +   +  +  +++  L+H    A    + S+I
Sbjct: 421 IGPYSQSICANGVVFISGQIGLIPSVMELK--LHDKIFEMVLALQHANRVAKAMRVGSLI 478

Query: 261 KTTILLANMDDFQCVNQIYAEYFPKNCPARATYQVT---KLPLNAAVE 395
                + +  D  CV +I++EY  KN    +   V     LP NA+VE
Sbjct: 479 ACLAYVCDSRDADCVVKIWSEY-TKNTGESSPVLVALVDALPRNASVE 525


>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 648

 Score = 29.5 bits (63), Expect = 0.36
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +3

Query: 168 VSGGVGAQTRQVLENLK-HVVEAGGGSLESVIKTTILLANMDDFQCV 305
           ++GG+  Q +Q L N   HVV A  G L SVI    L  N    +C+
Sbjct: 226 ITGGLAVQKQQRLLNKHPHVVVATPGRLWSVINENNLTGNFKKIKCL 272


>SPAC5H10.06c |adh4||alcohol dehydrogenase Adh4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 422

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
 Frame = +3

Query: 54  IVTSPDVYKPVGPYSQ--AILSDKTLYISGVLGMDRDAQLVSGGVGAQTRQVLENLKHVV 227
           IVT P + K VG Y +  A+L ++++ +    G+  +  + +   G +  +  EN   +V
Sbjct: 79  IVTDPGIIK-VGLYDKVKALLEEQSITVHLYDGVQPNPTVGNVNQGLEIVKK-ENCDSMV 136

Query: 228 EAGGGSLESVIKTTILLA 281
             GGGS     K   LLA
Sbjct: 137 SIGGGSAHDCAKGIALLA 154


>SPBC342.04 |||adhesion regulating molecule protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 291

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 22/74 (29%), Positives = 31/74 (41%)
 Frame = +3

Query: 24  TANAHRVVKTIVTSPDVYKPVGPYSQAILSDKTLYISGVLGMDRDAQLVSGGVGAQTRQV 203
           T N    V  IV+SP   + +  +SQA+ S   + I   LG+  D        GA   Q 
Sbjct: 219 TPNNLEGVLAIVSSPQYAQALRSFSQALNSPGGVNIISALGLSLDESANPNEGGA--LQF 276

Query: 204 LENLKHVVEAGGGS 245
           L+ +   V    GS
Sbjct: 277 LKAIARFVSRNNGS 290


>SPAC2E1P5.02c |mug109||sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 163

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 283 IWTIFNALIKFMLNIFLKIALHGL 354
           IW  F AL+  M+ +FL   +HGL
Sbjct: 77  IWYPF-ALLALMVGVFLSFVMHGL 99


>SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 6/43 (13%)
 Frame = -3

Query: 138 LPIYRESCQ------IKWLDCRVQPVYRHLGMLQWSSPLCEHL 28
           LP YR  C+      I W D     +Y HLG+      + E+L
Sbjct: 178 LPWYRGECKAALEDTIMWADKTTSCIYEHLGVTVEEQKMIENL 220


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,442,448
Number of Sequences: 5004
Number of extensions: 52073
Number of successful extensions: 132
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)