Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_L02
(569 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0593 + 19808148-19808310,19809416-19809531,19810129-198102... 107 6e-24
02_05_1170 + 34663853-34663928,34664038-34664078,34664317-346643... 42 5e-04
02_01_0716 + 5348720-5349115 30 1.1
12_01_0112 - 860330-861946 30 1.5
02_05_0218 + 26860319-26862448 30 1.5
10_03_0010 + 7007694-7007888,7007994-7008059,7008161-7008334,700... 28 4.6
07_01_0698 - 5269329-5269579,5270673-5270928,5271158-5271725,527... 28 6.0
03_06_0701 - 35620559-35620777,35620872-35620949,35621038-356211... 28 6.0
04_04_1091 - 30798420-30798584,30798870-30799045,30799127-307992... 27 8.0
02_02_0497 + 10961079-10963824,10964182-10964282,10964759-109648... 27 8.0
>07_03_0593 +
19808148-19808310,19809416-19809531,19810129-19810202,
19810286-19810335,19810498-19810592
Length = 165
Score = 107 bits (257), Expect = 6e-24
Identities = 60/135 (44%), Positives = 88/135 (65%)
Frame = +3
Query: 6 MSSTDSTANAHRVVKTIVTSPDVYKPVGPYSQAILSDKTLYISGVLGMDRDAQLVSGGVG 185
+S++ STA A V K V + +GPYSQAI ++ +++SGVLG++ +
Sbjct: 44 VSASLSTAAA-AVKKEAVQTEKAPAALGPYSQAIKANNMVFVSGVLGLNPE--------- 93
Query: 186 AQTRQVLENLKHVVEAGGGSLESVIKTTILLANMDDFQCVNQIYAEYFPKNCPARATYQV 365
V++N+ +++A G S SV+KTTI+LA++ DF+ VN+IYA+YFP PAR+TYQV
Sbjct: 94 -----VMKNMGEILKASGASYSSVVKTTIMLADLQDFKKVNEIYAKYFPAPAPARSTYQV 148
Query: 366 TKLPLNAAVEIEAIA 410
LPLNA +EIE IA
Sbjct: 149 AALPLNARIEIECIA 163
>02_05_1170 + 34663853-34663928,34664038-34664078,34664317-34664386,
34664499-34664647,34664784-34664879,34665406-34665476,
34665637-34665698,34665778-34665841,34665950-34666034,
34666129-34666255,34666381-34666454,34666539-34666599,
34666683-34666771,34666897-34667206,34667763-34667815,
34668299-34668370,34668648-34668914,34669015-34669047,
34669163-34669245,34669522-34669594,34669834-34670170,
34670302-34670633,34670816-34671135,34671261-34671612,
34671691-34671906
Length = 1170
Score = 41.5 bits (93), Expect = 5e-04
Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = +3
Query: 84 VGPYSQAILSDKTLYISGVLGMDRDA-QLVSGGVGAQTRQVLENLKHVVEAGGGSLES 254
+GPYSQA L + LY++G LG+D +L GG A+ L N + V A G S+ S
Sbjct: 870 IGPYSQATLHGEILYMAGQLGLDPPTMKLCPGGPTAELEFALRNSEAVANAFGCSIFS 927
>02_01_0716 + 5348720-5349115
Length = 131
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -2
Query: 238 PPASTTCFKFSKTWRVCAPTPPDTNCASRSMPS 140
PP S T S TW PTPP + A+ S P+
Sbjct: 39 PPRSKTATAASLTWTSMVPTPPPLSGAASSGPT 71
>12_01_0112 - 860330-861946
Length = 538
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/40 (30%), Positives = 25/40 (62%)
Frame = +3
Query: 147 MDRDAQLVSGGVGAQTRQVLENLKHVVEAGGGSLESVIKT 266
++RD+ SGG ++R+ + ++ GGG++++V KT
Sbjct: 284 VERDSAASSGGANGRSRRASLSGAGALQGGGGAMQTVAKT 323
>02_05_0218 + 26860319-26862448
Length = 709
Score = 29.9 bits (64), Expect = 1.5
Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 1/95 (1%)
Frame = +3
Query: 177 GVGAQTRQVLENLKHVVEAGGGSLESVIKTTILLANMDDFQCVNQIYAEYFPK-NCPARA 353
GVG Q L+ L H AGG +L ++K T ++ + + + R
Sbjct: 465 GVGGQWASFLQELAHRRGAGGMAL-PLLKLTAFMSTASHHPLELHLTQDNLSQFAAELRI 523
Query: 354 TYQVTKLPLNAAVEIEAIALSGDLVITEAGPCPCA 458
++ + L+A E I+ SGD V+ + P C+
Sbjct: 524 PFEFNAVSLDAFNPAELISSSGDEVVAVSLPVGCS 558
>10_03_0010 +
7007694-7007888,7007994-7008059,7008161-7008334,
7009232-7009306,7009384-7009510,7012280-7012371,
7012496-7012566,7012683-7012792,7013016-7013053,
7013825-7013960,7014382-7014456,7014574-7014697,
7014917-7015013,7015426-7015451,7016180-7016255,
7016499-7016636,7016735-7016872
Length = 585
Score = 28.3 bits (60), Expect = 4.6
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -3
Query: 153 DPCRVLPIYRESCQIKWLDCRVQPVYRHLGMLQWSS 46
DPCR L + +ES Q W++ + Y+ LG S
Sbjct: 435 DPCRFLEVIKESMQSLWIE--IVKKYQKLGFCSTKS 468
>07_01_0698 -
5269329-5269579,5270673-5270928,5271158-5271725,
5271757-5272763
Length = 693
Score = 27.9 bits (59), Expect = 6.0
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +3
Query: 159 AQLVSGGVGAQTRQVLENLKHVVEAGGGS 245
AQ V GG G + + + N VEAGGGS
Sbjct: 75 AQAVVGGGGEKAKDLNNNAAPRVEAGGGS 103
>03_06_0701 -
35620559-35620777,35620872-35620949,35621038-35621191,
35621279-35621391,35621487-35621586,35622193-35622389,
35622470-35622526,35622630-35622734,35622824-35622931,
35623651-35623848,35624022-35624024
Length = 443
Score = 27.9 bits (59), Expect = 6.0
Identities = 9/36 (25%), Positives = 21/36 (58%)
Frame = -3
Query: 222 HASSFLKLGASVLPLHQIPTAHHDPCRVLPIYRESC 115
H + +L++ +++IP+ DP + +P+ R+ C
Sbjct: 227 HNNDYLEICRCYKSIYEIPSIKEDPSKWIPVLRKIC 262
>04_04_1091 -
30798420-30798584,30798870-30799045,30799127-30799216,
30799673-30799742,30800598-30800697,30800922-30801001,
30801347-30801412,30801489-30801597,30801862-30801905,
30802171-30802242,30803198-30803311,30804342-30804398
Length = 380
Score = 27.5 bits (58), Expect = 8.0
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +3
Query: 126 YISGVLGMDRDAQLVSGGVGAQTRQVLENLKHVV 227
YISGV G+D S VG LEN+ +V
Sbjct: 137 YISGVKGLDSSGLSSSAAVGIAYLMALENVNDLV 170
>02_02_0497 +
10961079-10963824,10964182-10964282,10964759-10964800,
10966918-10966986
Length = 985
Score = 27.5 bits (58), Expect = 8.0
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -2
Query: 415 LRAIASISTAAFRGSLVTWYVARAGQFLGKY 323
+RA+ SI ++ G +VTW AG + +Y
Sbjct: 354 MRAVESIFRSSKMGDIVTWNTVIAGYVMNRY 384
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,851,516
Number of Sequences: 37544
Number of extensions: 347855
Number of successful extensions: 834
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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