Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_L02
         (569 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   3.7  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   4.9  
AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding pr...    22   4.9  
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    21   8.6  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    21   8.6  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    21   8.6  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    21   8.6  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 7/26 (26%), Positives = 16/26 (61%)
 Frame = +3

Query: 105 ILSDKTLYISGVLGMDRDAQLVSGGV 182
           ++SD  ++I GV+ +++    V  G+
Sbjct: 406 VISDDNIHIKGVISLNKLTSYVISGI 431


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
 Frame = -1

Query: 107 NGL--TVGSNRFIDIWGCYNGL 48
           NGL  T   NRF+   G YNGL
Sbjct: 406 NGLHTTTAHNRFLGGIGGYNGL 427


>AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding
           protein protein.
          Length = 132

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +3

Query: 177 GVGAQTRQVLENLKHVVEAGGGSLESVIKTTILLANMD 290
           GVG  TR+V  ++  VVE    +    +KTT    N +
Sbjct: 25  GVGIMTRKVGSSVSPVVELTENNGLYTLKTTSPFKNTE 62


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -1

Query: 542 IHNNEYF*NLNMYDSFQNTLQNINIL 465
           IHNN Y  N N  +  +    NIN +
Sbjct: 90  IHNNNYKYNYNNNNYNKKLYYNINYI 115


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -1

Query: 542 IHNNEYF*NLNMYDSFQNTLQNINIL 465
           IHNN Y  N N  +  +    NIN +
Sbjct: 90  IHNNNYKYNYNNNNYNKKLYYNINYI 115


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -1

Query: 542 IHNNEYF*NLNMYDSFQNTLQNINIL 465
           IHNN Y  N N  +  +    NIN +
Sbjct: 90  IHNNNYKYNYNNNNYNKKLYYNINYI 115


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -1

Query: 542 IHNNEYF*NLNMYDSFQNTLQNINIL 465
           IHNN Y  N N  +  +    NIN +
Sbjct: 90  IHNNNYKYNYNNNNYNKKLYYNINYI 115


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,082
Number of Sequences: 438
Number of extensions: 3778
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16381902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)