Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_L01
(477 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces... 175 4e-45
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 32 0.052
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 28 0.64
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo... 27 1.9
SPBC17A3.03c |||phosphoprotein phosphatase |Schizosaccharomyces ... 26 2.6
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo... 25 5.9
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 25 5.9
SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr... 25 7.9
SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces... 25 7.9
SPAC513.02 |||phosphoglycerate mutase family|Schizosaccharomyces... 25 7.9
>SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 195
Score = 175 bits (425), Expect = 4e-45
Identities = 81/134 (60%), Positives = 103/134 (76%)
Frame = +2
Query: 8 KKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKR 187
KK+I+++VP P LKAF K Q RL RELEKKF+ +HV+F+ R+ILPKP K+RV QKR
Sbjct: 57 KKAIVVFVPQPLLKAFHKCQARLTRELEKKFADRHVIFIAQRRILPKPGRKSRVT--QKR 114
Query: 188 PRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDXNQQTTIEHKVDTFQSV 367
PRSRTLT+V++AILED+VFP EI+GKR R DG + IKV LD T+++K+ +F SV
Sbjct: 115 PRSRTLTAVHNAILEDIVFPTEIIGKRTRQATDGRKTIKVFLDNRDANTVDYKLGSFSSV 174
Query: 368 YKKLTGREVTFEFP 409
Y KLTG+ VTFEFP
Sbjct: 175 YHKLTGKNVTFEFP 188
>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 941
Score = 31.9 bits (69), Expect = 0.052
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Frame = +2
Query: 197 RTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDXNQQTTIEHKVDTF-QSVYK 373
++L + YD + EDL ++ +GK+ ++ ++L VHL + TIE + F Q+V
Sbjct: 565 QSLFASYDKLQEDL---SKRLGKKATLRKSPAKLYYVHLKLSGNETIERFIKKFTQAVLF 621
Query: 374 KLTGREVTFEFP 409
+ T +F+ P
Sbjct: 622 QSTKSTASFQLP 633
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 28.3 bits (60), Expect = 0.64
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Frame = +2
Query: 110 HVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDG 289
H V V D+ + P N+Q R +L+ + D + + V E V R K G
Sbjct: 1594 HTVLVLDKSVHQFPWESLPCLNRQSVSRVPSLSILRDILSQSFVVNGEYVEVR---KEAG 1650
Query: 290 SQLIKVHLD-XNQQTTIEHKV 349
S ++ LD + Q EHK+
Sbjct: 1651 SYILNPSLDLKHTQEMFEHKL 1671
>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
Vps1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 678
Score = 26.6 bits (56), Expect = 1.9
Identities = 13/31 (41%), Positives = 22/31 (70%)
Frame = +2
Query: 23 IYVPMPKLKAFQKIQIRLVRELEKKFSGKHV 115
+++P K F+KI+ +VRE E+K +GK+V
Sbjct: 101 LHLPGQKFFEFEKIREEIVRETEEK-TGKNV 130
>SPBC17A3.03c |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 263
Score = 26.2 bits (55), Expect = 2.6
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Frame = -3
Query: 307 HFDEL*AIELHSDA--FANN--LGREYQIFQYGVIYRSQCPGTGPFLFV 173
H D + ++ +DA F+N+ + + + G+IYRS CP F F+
Sbjct: 36 HKDGIKVVDTSNDASTFSNSPLVPDNFGVVYPGIIYRSACPRASNFNFL 84
>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 254
Score = 25.0 bits (52), Expect = 5.9
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +2
Query: 143 PKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKR 268
P S + R N+++ RSR S + + LED+++ V R
Sbjct: 49 PVLSPRRRRMNRRRNERSRNFPSNHLSYLEDMIYLGPQVSTR 90
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1811
Score = 25.0 bits (52), Expect = 5.9
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = -1
Query: 336 IVVCWFXSRCTLMSCEPSSFTLMRLPTISAGNTRSSNM 223
I V W C+L P F+L +L IS N R M
Sbjct: 1173 IEVSWEEIECSLELSNPRLFSLQKLVEISYYNMRRIRM 1210
>SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 541
Score = 24.6 bits (51), Expect = 7.9
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = -1
Query: 99 NFFSNSRTSLIWIFWNAFSLGIGT*MIIDFFM 4
+F S W+FW +G +II FFM
Sbjct: 245 DFICQSYLGWCWVFWINMIMGAVVIVIIFFFM 276
>SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 557
Score = 24.6 bits (51), Expect = 7.9
Identities = 10/31 (32%), Positives = 14/31 (45%)
Frame = -2
Query: 227 IWRHIQKSVSWNGAFSVCWLHVSCGWAWAGS 135
+W HI+ W F++ L CG W S
Sbjct: 247 VWSHIENYTDWPDGFAI--LMSFCGVIWTMS 275
>SPAC513.02 |||phosphoglycerate mutase family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 216
Score = 24.6 bits (51), Expect = 7.9
Identities = 18/66 (27%), Positives = 28/66 (42%)
Frame = +2
Query: 80 RELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIV 259
++LEK+F G + + PK + K RSR L + A + + VF
Sbjct: 108 KDLEKQFPGYDYTACHEDPVFPKKEKIYKADYKTSIQRSRVLAEFF-AKVPEKVFAVVTH 166
Query: 260 GKRIRV 277
G IR+
Sbjct: 167 GVDIRL 172
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,037,473
Number of Sequences: 5004
Number of extensions: 41866
Number of successful extensions: 130
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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