Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_L01
(477 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0683 + 10363963-10364037,10364112-10364185,10364312-103644... 154 4e-38
05_03_0610 - 16167557-16167679,16168236-16168418,16169291-161694... 153 7e-38
02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679 73 9e-14
02_03_0395 - 18554596-18555090,18555194-18555566,18556026-18556168 30 0.84
12_01_0191 + 1413287-1413346,1413504-1413632,1416819-1416998,141... 29 1.5
06_01_0983 - 7630651-7630683,7630717-7630942,7630993-7631234,763... 29 1.9
11_02_0078 - 8074247-8074837,8075815-8076341,8076453-8077022,807... 29 2.6
02_02_0312 + 8855664-8855807,8856402-8856465,8858399-8858547,885... 28 4.5
06_01_0793 - 5918912-5919793,5919830-5920285 27 7.8
02_01_0293 + 1955439-1956457,1957002-1957322,1957405-1957411,195... 27 7.8
>03_02_0683 +
10363963-10364037,10364112-10364185,10364312-10364435,
10365047-10365229,10365478-10365600
Length = 192
Score = 154 bits (373), Expect = 4e-38
Identities = 72/134 (53%), Positives = 104/134 (77%)
Frame = +2
Query: 8 KKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKR 187
+K+++I+VP KAF+KI +RLVRELEKKFSGK VV V R+I+ P + V +R
Sbjct: 58 RKAVVIHVPYRLRKAFKKIHVRLVRELEKKFSGKDVVIVATRRIVRPPKKGSAV----QR 113
Query: 188 PRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDXNQQTTIEHKVDTFQSV 367
PR+RTLT+V+D ILED+V+PAEIVGKRIR +LDG+++IK+ LD ++ E+K++TF +V
Sbjct: 114 PRTRTLTAVHDGILEDVVYPAEIVGKRIRYRLDGAKVIKIFLDPKERNNTEYKLETFSAV 173
Query: 368 YKKLTGREVTFEFP 409
Y++L G++V FE+P
Sbjct: 174 YRRLCGKDVAFEYP 187
>05_03_0610 -
16167557-16167679,16168236-16168418,16169291-16169414,
16169514-16169626,16169668-16169742
Length = 205
Score = 153 bits (371), Expect = 7e-38
Identities = 72/134 (53%), Positives = 101/134 (75%)
Frame = +2
Query: 8 KKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKR 187
+K++IIYVP KA++KI +RLVRELEKKFSGK VV V R+I+ P + V R
Sbjct: 71 RKAVIIYVPYRLRKAYKKIHVRLVRELEKKFSGKDVVLVATRRIVRPPKKGSAVV----R 126
Query: 188 PRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDXNQQTTIEHKVDTFQSV 367
PR+RTLT+V+D ILED+V+PAEIVGKR+R LDG +++K+ LD ++ E+K+DTF SV
Sbjct: 127 PRTRTLTAVHDGILEDVVYPAEIVGKRVRYHLDGRKIMKIFLDPKERNNTEYKLDTFSSV 186
Query: 368 YKKLTGREVTFEFP 409
Y++L G++V F++P
Sbjct: 187 YRRLCGKDVVFDYP 200
>02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679
Length = 129
Score = 73.3 bits (172), Expect = 9e-14
Identities = 40/84 (47%), Positives = 57/84 (67%)
Frame = +2
Query: 11 KSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRP 190
K ++I+V KAF+KI +RLV+ELEKKFSGK VVF R+I+ +P +K + P
Sbjct: 44 KVVVIHVLYHLCKAFKKIHVRLVKELEKKFSGKDVVFDATRRIV-RPLNKGSAVH---HP 99
Query: 191 RSRTLTSVYDAILEDLVFPAEIVG 262
R+RTL +V+D ILED+V ++G
Sbjct: 100 RTRTLITVHDGILEDVVSQLRLLG 123
>02_03_0395 - 18554596-18555090,18555194-18555566,18556026-18556168
Length = 336
Score = 30.3 bits (65), Expect = 0.84
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = -1
Query: 183 FCLLATRVLWLGLGRILRSPTNTTCLPLNFFSNSRTSLI 67
F L A+ L L L +L T+ CLPL FF+ + SL+
Sbjct: 4 FSLFASLSLSLSLSFVLADITDNPCLPLIFFAGNLISLM 42
>12_01_0191 +
1413287-1413346,1413504-1413632,1416819-1416998,
1417747-1417938,1418533-1418673,1418785-1418912,
1419088-1419262,1419664-1419852,1420628-1420749,
1420829-1420874
Length = 453
Score = 29.5 bits (63), Expect = 1.5
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = +2
Query: 188 PRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIK 304
P +RTLT+ +D IL+D + A+I GK + + + +IK
Sbjct: 86 PNTRTLTNAHDGILDD-INCAQIAGKHVGDHSNCANVIK 123
>06_01_0983 -
7630651-7630683,7630717-7630942,7630993-7631234,
7631502-7631591,7631680-7631845,7632225-7633191,
7633402-7633591,7633908-7634048,7634416-7634736
Length = 791
Score = 29.1 bits (62), Expect = 1.9
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +2
Query: 239 VFPAEIVGKRIRVKLDGSQLIKVHLDXNQQTTIEHK 346
+FPA I G + KLD ++L K H D + ++HK
Sbjct: 589 IFPARIGGYLLDSKLDRNEL-KKHFDQTRANRLDHK 623
>11_02_0078 -
8074247-8074837,8075815-8076341,8076453-8077022,
8077725-8077752
Length = 571
Score = 28.7 bits (61), Expect = 2.6
Identities = 25/78 (32%), Positives = 37/78 (47%)
Frame = -1
Query: 375 FLYTDWKVSTLCSIVVCWFXSRCTLMSCEPSSFTLMRLPTISAGNTRSSNMASYTEVSVL 196
FL +D +CS + F C L E F L+ TI+ + MA+ T +
Sbjct: 463 FLISD--TLAMCSSLAVAFV--CILSRSEDLEF-LLYYRTITRNLMWLAYMATTTAFAT- 516
Query: 195 ERGLFCLLATRVLWLGLG 142
GL+ +LA R+LWL +G
Sbjct: 517 --GLYTVLAPRILWLAIG 532
>02_02_0312 +
8855664-8855807,8856402-8856465,8858399-8858547,
8859258-8859674
Length = 257
Score = 27.9 bits (59), Expect = 4.5
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = -3
Query: 397 SHFAPRQLLVYRLEGVNLVFNS 332
+H A +++L ++GVNLVFNS
Sbjct: 59 AHCASKEILSSSIDGVNLVFNS 80
>06_01_0793 - 5918912-5919793,5919830-5920285
Length = 445
Score = 27.1 bits (57), Expect = 7.8
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +3
Query: 69 SGLSVS*KRSSAVSMLCSLVTVRSCP 146
SG+SV+ KR S C+L +RSCP
Sbjct: 166 SGMSVA-KRCSLAMERCTLAAMRSCP 190
>02_01_0293 +
1955439-1956457,1957002-1957322,1957405-1957411,
1957954-1958041,1958143-1958324,1958508-1958644,
1958790-1958856,1959132-1959246,1959390-1959501,
1960420-1960495,1960576-1960758,1961166-1961326,
1961463-1961532,1962721-1962928,1963015-1963304,
1963388-1963509,1963605-1963749,1964040-1964113,
1964464-1964911
Length = 1274
Score = 27.1 bits (57), Expect = 7.8
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = -2
Query: 200 SWNGAFSVCWLHVSCGWAWAGSYG 129
S G +CW+H + GW A +G
Sbjct: 146 SGGGVQDLCWIHHASGWLLASIHG 169
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,265,937
Number of Sequences: 37544
Number of extensions: 281878
Number of successful extensions: 768
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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