Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_L01
         (477 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20876| Best HMM Match : Ribosomal_S7e (HMM E-Value=0)               95   4e-32
SB_28440| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.21 
SB_53959| Best HMM Match : 7tm_1 (HMM E-Value=0.016)                   31   0.64 
SB_40632| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.5  
SB_23058| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.0  
SB_47345| Best HMM Match : Neural_ProG_Cyt (HMM E-Value=8.3)           27   6.0  
SB_35937| Best HMM Match : LRR_1 (HMM E-Value=7.1e-09)                 27   6.0  
SB_31376| Best HMM Match : CLN3 (HMM E-Value=5.5e-06)                  27   6.0  
SB_7447| Best HMM Match : CHGN (HMM E-Value=0)                         27   7.9  
SB_1011| Best HMM Match : 7tm_2 (HMM E-Value=2e-40)                    27   7.9  
SB_640| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   7.9  

>SB_20876| Best HMM Match : Ribosomal_S7e (HMM E-Value=0)
          Length = 157

 Score = 95.5 bits (227), Expect(2) = 4e-32
 Identities = 45/63 (71%), Positives = 55/63 (87%)
 Frame = +2

Query: 8   KKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKR 187
           KK+III+VP+P+++AFQKIQ RLVRELEKKFSGKHVV V  R+ILP+P+ K+R   KQKR
Sbjct: 59  KKAIIIFVPVPQIRAFQKIQTRLVRELEKKFSGKHVVIVAQRRILPRPTRKSR-NQKQKR 117

Query: 188 PRS 196
           PRS
Sbjct: 118 PRS 120



 Score = 60.1 bits (139), Expect(2) = 4e-32
 Identities = 24/34 (70%), Positives = 30/34 (88%)
 Frame = +2

Query: 308 HLDXNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 409
           HLD  QQTTI+HK++TF +VYKKLTG++V FEFP
Sbjct: 121 HLDKTQQTTIDHKLETFSTVYKKLTGKDVVFEFP 154


>SB_28440| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 116

 Score = 32.3 bits (70), Expect = 0.21
 Identities = 18/81 (22%), Positives = 39/81 (48%)
 Frame = -1

Query: 405 NSKVTSRPVNFLYTDWKVSTLCSIVVCWFXSRCTLMSCEPSSFTLMRLPTISAGNTRSSN 226
           ++++ +  +  ++T   + T  ++V C     C  +    S  T++ +P      TRS N
Sbjct: 34  SNEIVAVTLTTIFTCVTIVTCATVVTCVTVITCVTVIAYVSGLTVLLMPV-----TRSRN 88

Query: 225 MASYTEVSVLERGLFCLLATR 163
           M+  + + +L RGLF  +  +
Sbjct: 89  MSRVSVLRLLSRGLFLTITNQ 109


>SB_53959| Best HMM Match : 7tm_1 (HMM E-Value=0.016)
          Length = 185

 Score = 30.7 bits (66), Expect = 0.64
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -2

Query: 191 GAFSVCWLHVSCGWAWAGSYGH 126
           GAF VCWL  S G +W  + GH
Sbjct: 105 GAFVVCWLPYSIGTSWKLATGH 126


>SB_40632| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 776

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +3

Query: 48  RHSKRSKSGLSVS*KRSSAVSMLCS 122
           RH  RS+S L +  K+S AV++LCS
Sbjct: 574 RHRSRSRSRLEIVSKKSPAVNVLCS 598


>SB_23058| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 554

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 23/76 (30%), Positives = 33/76 (43%)
 Frame = -3

Query: 406 ELESHFAPRQLLVYRLEGVNLVFNSCLLVXV*MHFDEL*AIELHSDAFANNLGREYQIFQ 227
           E E  F  +  LVY  +GV+ VF   L + +   F    AI L   A    LG   +++ 
Sbjct: 158 EKEPKFNAKSSLVYDPDGVHQVFLVLLFLTIIGEFFSAPAITLADSATLGVLGENKELYG 217

Query: 226 YGVIYRSQCPGTGPFL 179
              ++ S   GT  FL
Sbjct: 218 RQRLWGSLGWGTAMFL 233


>SB_47345| Best HMM Match : Neural_ProG_Cyt (HMM E-Value=8.3)
          Length = 151

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 11/26 (42%), Positives = 21/26 (80%)
 Frame = +2

Query: 29  VPMPKLKAFQKIQIRLVRELEKKFSG 106
           VP+P++ A QK++ +L R++E+K +G
Sbjct: 69  VPLPQVSAMQKVKGKL-RDMEQKLNG 93


>SB_35937| Best HMM Match : LRR_1 (HMM E-Value=7.1e-09)
          Length = 224

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = -1

Query: 219 SYTEVSVLERGLFCLLATRVLWLGLGRILRSPTNTTCLPLNFFSNSRTSLIWIFW 55
           SY  +S +   +  L A R L L   ++   P +T  LPL +F  S   +  +FW
Sbjct: 60  SYNRLSFIPADIGKLRALRELNLEGNQLGAMPISTLFLPLKYFRISNNFIHPLFW 114


>SB_31376| Best HMM Match : CLN3 (HMM E-Value=5.5e-06)
          Length = 416

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 8/78 (10%)
 Frame = -1

Query: 426 IYK*GSGNSKVTSRPVNFLYTD-WKVSTLCSIVVC-------WFXSRCTLMSCEPSSFTL 271
           +Y+ G+G   +     N +YT  WKV+++CSI  C       W   +  L   E  S++ 
Sbjct: 128 VYRTGAGAGGLA---FNLIYTGKWKVASICSIPFCCLPLLSYWLLDKRPLQ--ESDSYSG 182

Query: 270 MRLPTISAGNTRSSNMAS 217
           ++   +    ++++N++S
Sbjct: 183 VKYTKVDEKESQNNNLSS 200


>SB_7447| Best HMM Match : CHGN (HMM E-Value=0)
          Length = 918

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 15/54 (27%), Positives = 24/54 (44%)
 Frame = +2

Query: 176 KQKRPRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDXNQQTTI 337
           K+KRP       ++DAI     F     G   + KLD   L  +  D +++ T+
Sbjct: 799 KRKRPSIEKFAIIFDAITTKARFARYKNGSSKKHKLDKRPLFAMDSDSDEELTV 852


>SB_1011| Best HMM Match : 7tm_2 (HMM E-Value=2e-40)
          Length = 406

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 209 KSVSWNGAFSVCWLHVSCGWAWA 141
           K   ++GA + CWL V  G  WA
Sbjct: 260 KGYGYHGAQTACWLSVDNGLIWA 282


>SB_640| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 917

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +2

Query: 128 DRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILED 235
           D  I+P P H+T   N +K      L S+ D   +D
Sbjct: 434 DELIIPPPRHRTETHNDEKFNVEERLRSLLDVAADD 469


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,392,195
Number of Sequences: 59808
Number of extensions: 333002
Number of successful extensions: 1041
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1038
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 989515521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)