Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_L01
         (477 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    24   0.73 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    24   0.73 
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   5.1  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   5.1  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   6.8  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   9.0  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   9.0  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   9.0  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   9.0  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 24.2 bits (50), Expect = 0.73
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = +2

Query: 203 LTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDXNQQTT 334
           L S Y+ ++  +V  ++++  R+ +KL  SQLI V+L     TT
Sbjct: 36  LLSNYNKLVRPVVNTSDVL--RVCIKLKLSQLIDVNLKNQIMTT 77


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 24.2 bits (50), Expect = 0.73
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = +2

Query: 203 LTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDXNQQTT 334
           L S Y+ ++  +V  ++++  R+ +KL  SQLI V+L     TT
Sbjct: 36  LLSNYNKLVRPVVNTSDVL--RVCIKLKLSQLIDVNLKNQIMTT 77


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +2

Query: 203 LTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDXNQQTT 334
           L S Y+ ++  +V   + +   +++KL  SQLI V+L     TT
Sbjct: 32  LLSNYNKLVRPVVNVTDAL--TVKIKLKLSQLIDVNLKNQIMTT 73


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 6/19 (31%), Positives = 12/19 (63%)
 Frame = -1

Query: 99  NFFSNSRTSLIWIFWNAFS 43
           + F+   T  +W+FW +F+
Sbjct: 210 DIFAMIGTIFLWLFWPSFN 228


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.0 bits (42), Expect = 6.8
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 476 FSFFLLQFYFYCKIVSKFTSKVRGTRKSLRAPSTS 372
           F   LLQ   YC    K+T++ RG  K + + + S
Sbjct: 463 FLLKLLQDREYCPRYIKWTNRERGVFKLVDSKAVS 497


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 6/21 (28%), Positives = 10/21 (47%)
 Frame = -2

Query: 224 WRHIQKSVSWNGAFSVCWLHV 162
           WRH    + W   F V + ++
Sbjct: 401 WRHFAAIIEWLSFFIVIFTYI 421


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -2

Query: 203 VSWNGAFSVCWLHVSC 156
           + WN AF++    +SC
Sbjct: 509 IRWNSAFAIAPAVISC 524



 Score = 20.6 bits (41), Expect = 9.0
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = -1

Query: 195 ERGLFCLLATRVLWLGLGRILRSPTNTTCLPLNF 94
           E  +  L    V +L    +L +PT  TC+   F
Sbjct: 552 ELTIILLAGVLVCYLNTFLLLATPTTVTCILQRF 585


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = -2

Query: 191 GAFSVCWLHVSCGWAWAG 138
           G F +CWL       W+G
Sbjct: 342 GVFIICWLPFFVVNLWSG 359


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -2

Query: 203 VSWNGAFSVCWLHVSC 156
           + WN AF++    +SC
Sbjct: 599 IRWNSAFAIAPAVISC 614



 Score = 20.6 bits (41), Expect = 9.0
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = -1

Query: 195 ERGLFCLLATRVLWLGLGRILRSPTNTTCLPLNF 94
           E  +  L    V +L    +L +PT  TC+   F
Sbjct: 642 ELTIILLAGVLVCYLNTFLLLATPTTVTCILQRF 675


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,151
Number of Sequences: 438
Number of extensions: 3130
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12928545
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)