Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_L01
         (477 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S ri...   154   3e-38
At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) simila...   153   6e-38
At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) simila...   153   6e-38
At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) simila...   153   6e-38
At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) simila...   153   6e-38
At4g28430.1 68417.m04069 reticulon family protein contains Pfam ...    30   0.70 
At3g49400.1 68416.m05400 transducin family protein / WD-40 repea...    28   3.8  
At1g64590.1 68414.m07321 short-chain dehydrogenase/reductase (SD...    28   3.8  
At5g40640.1 68418.m04933 expressed protein                             27   6.6  
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ...    27   6.6  

>At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S
           ribosomal protein S7 homolog - Brassica oleracea,
           EMBL:AF144752
          Length = 190

 Score =  154 bits (374), Expect = 3e-38
 Identities = 74/134 (55%), Positives = 101/134 (75%)
 Frame = +2

Query: 8   KKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKR 187
           +K+++IYVP    KAF+KI  RLVRELEKKFSGK V+FV  R+I+  P     V    +R
Sbjct: 58  RKAVVIYVPFRLRKAFRKIHPRLVRELEKKFSGKDVIFVTTRRIMRPPKKGAAV----QR 113

Query: 188 PRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDXNQQTTIEHKVDTFQSV 367
           PR+RTLTSV++A+LED+ FPAEIVGKR R +LDGS+++KV LD  ++   E+K++T   V
Sbjct: 114 PRNRTLTSVHEAMLEDVAFPAEIVGKRTRYRLDGSKIMKVFLDAKEKNNTEYKLETMVGV 173

Query: 368 YKKLTGREVTFEFP 409
           Y+KLTG++V FE+P
Sbjct: 174 YRKLTGKDVVFEYP 187


>At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) similar
           to ribosomal protein S7 GB:AAD26256 from [Secale
           cereale]
          Length = 191

 Score =  153 bits (371), Expect = 6e-38
 Identities = 72/134 (53%), Positives = 102/134 (76%)
 Frame = +2

Query: 8   KKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKR 187
           +K+++IYVP    KAF+KI +RLVRELEKKFSGK V+FV  R+I+  P   + V    +R
Sbjct: 58  RKAVVIYVPFRLRKAFRKIHLRLVRELEKKFSGKDVIFVATRRIMRPPKKGSAV----QR 113

Query: 188 PRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDXNQQTTIEHKVDTFQSV 367
           PR+RTLTSV++A+LED+ +PAEIVGKR R +LDG++++KV LD   +   E+K++T   V
Sbjct: 114 PRNRTLTSVHEAMLEDVAYPAEIVGKRTRYRLDGTKIMKVFLDSKLKNDTEYKLETMVGV 173

Query: 368 YKKLTGREVTFEFP 409
           Y+KLTG++V FE+P
Sbjct: 174 YRKLTGKDVVFEYP 187


>At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) similar
           to ribosomal protein S7 GB:AAD26256 from [Secale
           cereale]
          Length = 191

 Score =  153 bits (371), Expect = 6e-38
 Identities = 72/134 (53%), Positives = 102/134 (76%)
 Frame = +2

Query: 8   KKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKR 187
           +K+++IYVP    KAF+KI +RLVRELEKKFSGK V+FV  R+I+  P   + V    +R
Sbjct: 58  RKAVVIYVPFRLRKAFRKIHLRLVRELEKKFSGKDVIFVATRRIMRPPKKGSAV----QR 113

Query: 188 PRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDXNQQTTIEHKVDTFQSV 367
           PR+RTLTSV++A+LED+ +PAEIVGKR R +LDG++++KV LD   +   E+K++T   V
Sbjct: 114 PRNRTLTSVHEAMLEDVAYPAEIVGKRTRYRLDGTKIMKVFLDSKLKNDTEYKLETMVGV 173

Query: 368 YKKLTGREVTFEFP 409
           Y+KLTG++V FE+P
Sbjct: 174 YRKLTGKDVVFEYP 187


>At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) similar
           to 40S ribosomal protein S7 homolog GI:5532505 from
           [Brassica oleracea]
          Length = 191

 Score =  153 bits (371), Expect = 6e-38
 Identities = 74/134 (55%), Positives = 103/134 (76%)
 Frame = +2

Query: 8   KKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKR 187
           +K+I++ VP    KA++KI +RLVRELEKKFSGK V+ +  R+I+ +P  K   A   KR
Sbjct: 58  RKAIVVNVPYRLRKAYRKIHVRLVRELEKKFSGKDVILIATRRIV-RPPKKGSAA---KR 113

Query: 188 PRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDXNQQTTIEHKVDTFQSV 367
           PR+RTLTSV++AIL+D+V PAEIVGKR R +LDG++++KV LD  ++   E+KV+ F +V
Sbjct: 114 PRNRTLTSVHEAILDDVVLPAEIVGKRTRYRLDGTKIMKVFLDPKERNNTEYKVEAFSAV 173

Query: 368 YKKLTGREVTFEFP 409
           YKKLTG++V FEFP
Sbjct: 174 YKKLTGKDVVFEFP 187


>At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) similar
           to 40S ribosomal protein S7 homolog GI:5532505 from
           [Brassica oleracea]
          Length = 191

 Score =  153 bits (371), Expect = 6e-38
 Identities = 74/134 (55%), Positives = 103/134 (76%)
 Frame = +2

Query: 8   KKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKR 187
           +K+I++ VP    KA++KI +RLVRELEKKFSGK V+ +  R+I+ +P  K   A   KR
Sbjct: 58  RKAIVVNVPYRLRKAYRKIHVRLVRELEKKFSGKDVILIATRRIV-RPPKKGSAA---KR 113

Query: 188 PRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDXNQQTTIEHKVDTFQSV 367
           PR+RTLTSV++AIL+D+V PAEIVGKR R +LDG++++KV LD  ++   E+KV+ F +V
Sbjct: 114 PRNRTLTSVHEAILDDVVLPAEIVGKRTRYRLDGTKIMKVFLDPKERNNTEYKVEAFSAV 173

Query: 368 YKKLTGREVTFEFP 409
           YKKLTG++V FEFP
Sbjct: 174 YKKLTGKDVVFEFP 187


>At4g28430.1 68417.m04069 reticulon family protein contains Pfam
           profile PF02453: Reticulon
          Length = 457

 Score = 30.3 bits (65), Expect = 0.70
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 260 QQSRPGIPDLPIWRHIQKSVSWNGAFSVCWL 168
           ++ R  I DL +WR + KS  W G   +C+L
Sbjct: 189 ERIRENISDLIMWRDVAKSTLWFGFGCICFL 219


>At3g49400.1 68416.m05400 transducin family protein / WD-40 repeat
           family protein contains 4 WD-40 repeats (PF00400); low
           similarity (47%) to Agamous-like MADS box protein AGL5
           (SP:P29385) {Arabidopsis thaliana}
          Length = 892

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = -1

Query: 345 LCSIVVCWFXSRCTLMSCEPSSFTLMRLPTISAGNTRSSNMASYTEVSVLERGLFC 178
           +C     WF   C  M+ E +  TL  LP+  + + +S   +S+++V+     LFC
Sbjct: 820 VCPPTPLWFCKCCNRMTLELAPETLFALPSFPS-DLKSLPKSSFSKVASKPFCLFC 874


>At1g64590.1 68414.m07321 short-chain dehydrogenase/reductase (SDR)
           family protein contains INTERPRO family IPR002198
           short-chain dehydrogenase/reductase (SDR) superfamily
          Length = 334

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +2

Query: 248 AEIVGKRIRVKLDGSQLIKVHLDXNQQTTIEHKVDTFQSV 367
           AE    RI  +   +++I +HLD +  T++   VD F+S+
Sbjct: 71  AEETKARILSEFPDAEIIVMHLDLSSLTSVRRFVDDFESL 110


>At5g40640.1 68418.m04933 expressed protein
          Length = 586

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 14/56 (25%), Positives = 26/56 (46%)
 Frame = +2

Query: 53  FQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYD 220
           F++  + LV++L      KH  F G  + +P+P         QK  + +T ++  D
Sbjct: 517 FRRHFVELVKKLSNDLDNKHNRFEGGSRSVPRPGKTVSRIFSQKSFKKKTSSNGSD 572


>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
           protein low similarity to nucleolar phosphoprotein
           (Nopp52), Tetrahymena thermophila, EMBL:TT51555;
           contains InterPro entry IPR000504: RNA-binding region
           RNP-1 (RNA recognition motif) (RRM)
          Length = 597

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 28/114 (24%), Positives = 48/114 (42%), Gaps = 4/114 (3%)
 Frame = +2

Query: 47  KAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAI 226
           K  Q+I+  L   L    S  +      + +L   SHK R++ ++KR    T     D I
Sbjct: 7   KLKQRIRQDLAESLSVSVSETNPQSQSLKLLLDSSSHKPRLSKREKRRNCETFAREDDEI 66

Query: 227 LEDLV---FPAEIVGKRIRVKLDGSQLIKV-HLDXNQQTTIEHKVDTFQSVYKK 376
            E+ V     +E    +I+ K      ++V  L+ ++ T  E K    ++  KK
Sbjct: 67  RENEVGNGGSSEKTDTKIKKKRKRDDAVEVDELEGDEGTKEEQKPQKKKNKKKK 120


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,683,921
Number of Sequences: 28952
Number of extensions: 225823
Number of successful extensions: 641
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 821630280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)