Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_K24
         (529 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49938-4|CAA90189.3| 2180|Caenorhabditis elegans Hypothetical pr...    28   3.6  
Z46811-1|CAA86842.3| 2180|Caenorhabditis elegans Hypothetical pr...    28   3.6  
AF316539-1|AAK01632.1| 2200|Caenorhabditis elegans PTP-3A protein.     28   3.6  
Z96048-3|CAB09418.1|  733|Caenorhabditis elegans Hypothetical pr...    27   6.3  

>Z49938-4|CAA90189.3| 2180|Caenorhabditis elegans Hypothetical
           protein C09D8.1a protein.
          Length = 2180

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 15/74 (20%), Positives = 31/74 (41%)
 Frame = +2

Query: 116 SALLKYDELYYNIVIGRYVSAARITMELKNEGRGEVIRLVVNKLLAESKRNVVDYAYKLV 295
           S ++ +    YN  I +YV   R+        RG+ +  + N L+ +       Y + + 
Sbjct: 354 SVVITWKPPKYNEAINKYVVNYRLKYSEGRSSRGKTMETLENSLVIDGLVAFQTYEFTVR 413

Query: 296 RKGEIGIVRDYFPI 337
             G +G+  +  P+
Sbjct: 414 SAGPVGVGLESLPV 427


>Z46811-1|CAA86842.3| 2180|Caenorhabditis elegans Hypothetical
           protein C09D8.1a protein.
          Length = 2180

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 15/74 (20%), Positives = 31/74 (41%)
 Frame = +2

Query: 116 SALLKYDELYYNIVIGRYVSAARITMELKNEGRGEVIRLVVNKLLAESKRNVVDYAYKLV 295
           S ++ +    YN  I +YV   R+        RG+ +  + N L+ +       Y + + 
Sbjct: 354 SVVITWKPPKYNEAINKYVVNYRLKYSEGRSSRGKTMETLENSLVIDGLVAFQTYEFTVR 413

Query: 296 RKGEIGIVRDYFPI 337
             G +G+  +  P+
Sbjct: 414 SAGPVGVGLESLPV 427


>AF316539-1|AAK01632.1| 2200|Caenorhabditis elegans PTP-3A protein.
          Length = 2200

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 15/74 (20%), Positives = 31/74 (41%)
 Frame = +2

Query: 116 SALLKYDELYYNIVIGRYVSAARITMELKNEGRGEVIRLVVNKLLAESKRNVVDYAYKLV 295
           S ++ +    YN  I +YV   R+        RG+ +  + N L+ +       Y + + 
Sbjct: 354 SVVITWKPPKYNEAINKYVVNYRLKYSEGRSSRGKTMETLENSLVIDGLVAFQTYEFTVR 413

Query: 296 RKGEIGIVRDYFPI 337
             G +G+  +  P+
Sbjct: 414 SAGPVGVGLESLPV 427


>Z96048-3|CAB09418.1|  733|Caenorhabditis elegans Hypothetical
           protein F57A10.3 protein.
          Length = 733

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 11/24 (45%), Positives = 19/24 (79%)
 Frame = +2

Query: 221 VIRLVVNKLLAESKRNVVDYAYKL 292
           ++R+ +NKLLA SK+ V+  A++L
Sbjct: 659 LVRIALNKLLANSKQTVMIIAHRL 682


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,290,843
Number of Sequences: 27780
Number of extensions: 213592
Number of successful extensions: 522
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 522
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)