Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_K23
         (523 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30135| Best HMM Match : MAS20 (HMM E-Value=1.5e-06)                113   8e-26
SB_37920| Best HMM Match : DUF755 (HMM E-Value=2.3)                    29   2.3  
SB_318| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   4.1  
SB_26778| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_5939| Best HMM Match : BAH (HMM E-Value=7.9e-18)                    27   9.4  

>SB_30135| Best HMM Match : MAS20 (HMM E-Value=1.5e-06)
          Length = 151

 Score =  113 bits (272), Expect = 8e-26
 Identities = 48/128 (37%), Positives = 81/128 (63%), Gaps = 2/128 (1%)
 Frame = +3

Query: 90  IAVGIAGTLFLGYCVYFDQQRRKDPLFKKKLRE--RRQNAHQNTSRSRTLSGPLPDMSDH 263
           +  G+ G++FL YC+YFD +RR DP +KKKL E  RR+ A +  + +  +   +PD++D 
Sbjct: 9   VVAGVCGSMFLAYCIYFDYKRRSDPDYKKKLIEKRRRERAQRQEADAADMQSRIPDLTDT 68

Query: 264 EAMQRFFLQQIQLGEELLASGDLEAGVEHLGQAVAVCGXXXXXXXXXXXXMPAPIFHLLL 443
            A+Q+FFL+++Q+GE+LL  G+ E+ V+HL  AVAVCG            +P  +F +L+
Sbjct: 69  AAVQKFFLEEVQIGEDLLTKGEYESAVKHLTNAVAVCGQPQQLLQVFKQTLPPAVFQMLI 128

Query: 444 KKLPEVSE 467
             + ++ +
Sbjct: 129 DNINQMKD 136


>SB_37920| Best HMM Match : DUF755 (HMM E-Value=2.3)
          Length = 193

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 139 LTNSDVRIPCSKRS*ESVDK 198
           +TN D+R+PC K+S   V+K
Sbjct: 44  ITNQDIRVPCKKKSAPDVNK 63


>SB_318| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1081

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
 Frame = +3

Query: 180 LRERRQNAHQNTSRSRTLSGPLPDMSDHEAMQRFFLQQIQL--GEELLASGDLEAGVEHL 353
           LRE  ++A +    S+   G  PD+S      +  + +++L  G E   +  +       
Sbjct: 413 LREINKDAFEREKESKNQQGDSPDLSSEYEDLKLEMDELKLRMGRETCRASCINESANAR 472

Query: 354 GQAVAVCG 377
           G+AV V G
Sbjct: 473 GEAVCVLG 480


>SB_26778| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1050

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 18/64 (28%), Positives = 29/64 (45%)
 Frame = +3

Query: 84   LGIAVGIAGTLFLGYCVYFDQQRRKDPLFKKKLRERRQNAHQNTSRSRTLSGPLPDMSDH 263
            LG+ + I   L +   +YF + RR   + K  L    +  H+ T R  T   PL D+   
Sbjct: 947  LGVVLVILVALVICVAIYFVKFRRCSKINKVGLIVNEEEEHKKT-RETTYEVPLIDLQHR 1005

Query: 264  EAMQ 275
            ++ Q
Sbjct: 1006 DSRQ 1009


>SB_5939| Best HMM Match : BAH (HMM E-Value=7.9e-18)
          Length = 1086

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 123 GYCVYFDQQRRKDPLFKKKLRERRQNAHQN 212
           G CVY D QR   P F   ++E R +  +N
Sbjct: 75  GDCVYIDSQRPDVPYFICSIKEFRTSRREN 104


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,294,469
Number of Sequences: 59808
Number of extensions: 296370
Number of successful extensions: 711
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)