Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_K23
         (523 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74472-2|CAA98945.1|  188|Caenorhabditis elegans Hypothetical pr...   104   3e-23
U23524-1|AAC46822.1|  268|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z68297-5|CAC70081.1|  394|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AF016676-9|AAG24107.1|  394|Caenorhabditis elegans Hypothetical ...    27   8.1  

>Z74472-2|CAA98945.1|  188|Caenorhabditis elegans Hypothetical
           protein F23H12.2 protein.
          Length = 188

 Score =  104 bits (250), Expect = 3e-23
 Identities = 52/143 (36%), Positives = 82/143 (57%), Gaps = 5/143 (3%)
 Frame = +3

Query: 60  MMEITRTTLGIAVGIAGTLFLGYCVYFDQQRRKDPLFKKKLRERRQ---NAHQNTSRSRT 230
           ++   ++ + +A GIAG  FLGYC+YFD +R   P +K K+R++R+    A     R   
Sbjct: 5   ILGFNKSNVVLAAGIAGAAFLGYCIYFDHKRINAPDYKDKIRQKRRAQAGAGGMAPRRPA 64

Query: 231 LSG--PLPDMSDHEAMQRFFLQQIQLGEELLASGDLEAGVEHLGQAVAVCGXXXXXXXXX 404
            +G    PD++D   MQRFFLQ++QLGEEL+A+G+++ G  H+  AV +CG         
Sbjct: 65  AAGNDAAPDVTDPSQMQRFFLQEVQLGEELMAAGNVDEGAVHIANAVMLCGESQQLLSIF 124

Query: 405 XXXMPAPIFHLLLKKLPEVSERL 473
              +    F  ++++LP   ERL
Sbjct: 125 QQTLSEDQFRAVVQQLPSTRERL 147


>U23524-1|AAC46822.1|  268|Caenorhabditis elegans Hypothetical
           protein C29F5.3 protein.
          Length = 268

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -2

Query: 312 TLHQAESVARRIFA*PHDHSYQVVVHSVYEI 220
           T  + ES+ +R+FA PH+  Y +V +S  ++
Sbjct: 92  TSQRTESLRQRLFALPHEPDYNLVKNSKRQV 122


>Z68297-5|CAC70081.1|  394|Caenorhabditis elegans Hypothetical
           protein F11A10.7 protein.
          Length = 394

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = -3

Query: 146 LVKVYTIS*KQSTGDTNSNP*CSTCYLHHFNFTFKRLQTRNNND 15
           L K+ T   + S G  N N    T  LH F F+ K+ +T   ND
Sbjct: 328 LTKIQTAKKRTSHGKKNQNE--ITGKLHKFKFSTKKERTTEQND 369


>AF016676-9|AAG24107.1|  394|Caenorhabditis elegans Hypothetical
           protein F41B5.10 protein.
          Length = 394

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 432 HLLLKKLPEVSERLRASMKASNVMQDD 512
           +L ++K+P  S RL   MK +N+M+ D
Sbjct: 340 YLNVRKMPNYSARLARMMKVNNLMRTD 366


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,220,459
Number of Sequences: 27780
Number of extensions: 217805
Number of successful extensions: 657
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)