Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_K23
         (523 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g29390.1 68414.m03594 stress-responsive protein, putative sim...    31   0.36 
At4g18480.1 68417.m02741 magnesium-chelatase subunit chlI, chlor...    31   0.62 
At3g07060.1 68416.m00838 expressed protein ; expression supporte...    29   2.5  
At3g56510.1 68416.m06284 TBP-binding protein, putative similar t...    28   3.3  
At3g51870.1 68416.m05688 mitochondrial substrate carrier family ...    28   3.3  
At4g37140.1 68417.m05259 esterase, putative similar to ethylene-...    28   4.4  

>At1g29390.1 68414.m03594 stress-responsive protein, putative
           similar to cold acclimation WCOR413-like protein gamma
           form [Hordeum vulgare] gi|18449100|gb|AAL69988; similar
           to stress-regulated protein SAP1 [Xerophyta viscosa]
           gi|21360378|gb|AAM47505
          Length = 226

 Score = 31.5 bits (68), Expect = 0.36
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -1

Query: 523 HSTSSSCITLLAFIEARSRSETSGSFFKRRWKIGAGIVCWST 398
           HSTS  C   L     R R+ T  +  ++R K G+ +VC++T
Sbjct: 37  HSTSVVCFNPLRLSADRQRTATVSARAEKRRKRGSSVVCYAT 78


>At4g18480.1 68417.m02741 magnesium-chelatase subunit chlI,
           chloroplast / Mg-protoporphyrin IX chelatase (CHLI) (CS)
           (CH42) identical to SP|P161127 Magnesium-chelatase
           subunit chlI, chloroplast precursor (Mg-protoporphyrin
           IX chelatase) (Protein CS/CH-42) {Arabidopsis thaliana}
          Length = 424

 Score = 30.7 bits (66), Expect = 0.62
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -3

Query: 521 LNIVILHNITRFH*GPKSFRDFWKLLQEKMEDR 423
           L + I+    RF   PK FRD +K  Q+K++D+
Sbjct: 297 LRVKIVEERARFDSNPKDFRDTYKTEQDKLQDQ 329


>At3g07060.1 68416.m00838 expressed protein ; expression supported
           by MPSS
          Length = 648

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 16/67 (23%), Positives = 27/67 (40%)
 Frame = +3

Query: 318 ASGDLEAGVEHLGQAVAVCGXXXXXXXXXXXXMPAPIFHLLLKKLPEVSERLRASMKASN 497
           ASG++E  VE   + + +CG            MP+         +    E+  AS+ +S 
Sbjct: 369 ASGEIEEVVEGFSKIIEICGQSITEKLSVLEHMPSNWLQQQTAAIASFKEQPSASLLSSF 428

Query: 498 VMQDDDV 518
               DD+
Sbjct: 429 TKLGDDI 435


>At3g56510.1 68416.m06284 TBP-binding protein, putative similar to
           TBP-binding protein ABT1 GI:6518527 from [Mus musculus]
          Length = 257

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = +3

Query: 171 KKKLRERR-QNAHQNTSRSRTLSGPLPDMSDHEAMQRFFLQQIQLGEELLASGDLEAGV 344
           KKKL+E+  + A +  +R       +P   DH  ++    Q  +LG   LA  D EA V
Sbjct: 32  KKKLKEKLLKEASKADNRGVCYLSRIPPHMDHVRLRHILAQYGELGRIYLAPEDSEAQV 90


>At3g51870.1 68416.m05688 mitochondrial substrate carrier family
           protein peroxisomal Ca-dependent solute carrier -
           Oryctolagus cuniculus, EMBL:AF004161
          Length = 381

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
 Frame = -2

Query: 198 FVYALSTSF*TRDPYVAVGQSIHNILK----TEYRRYQQQSLM*YVLS 67
           F Y L  S     PY+AV   I +++K     EYR+  Q SL+  VLS
Sbjct: 240 FYYGLGPSLVGIAPYIAVNFCIFDLVKKSLPEEYRKKAQSSLLTAVLS 287


>At4g37140.1 68417.m05259 esterase, putative similar to
           ethylene-induced esterase [Citrus sinensis] GI:14279437,
           polyneuridine aldehyde esterase [Rauvolfia serpentina]
           GI:6651393; contains Interpro entry IPR000379
           esterase/lipase/thioesterase family
          Length = 153

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = +3

Query: 21  IIACLQSFESEIKMMEITRTTLGIAVGIAGTLF 119
           ++  L+SF SE K++ +  +  GI+VG+A  +F
Sbjct: 59  LLEVLESFGSEDKVILVAHSLGGISVGLAADMF 91


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,547,074
Number of Sequences: 28952
Number of extensions: 199220
Number of successful extensions: 575
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)