Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_K22
         (421 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.12c |cbh2||centromere binding protein Cbh2|Schizosaccha...    29   0.22 
SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1 |Schizosacc...    26   2.1  
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    26   2.7  
SPAC2F7.15 |rsm24||mitochondrial ribosomal protein subunit S24|S...    25   3.6  
SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr...    25   3.6  
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    25   6.3  

>SPBC14F5.12c |cbh2||centromere binding protein
           Cbh2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 29.5 bits (63), Expect = 0.22
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 254 DSLEMHWRYLNRDRWTKNILEQRFR 328
           DS++ HWRY    R T +I+E+  R
Sbjct: 246 DSMDFHWRYNGTARMTTSIMEEWLR 270


>SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 677

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +2

Query: 191 CSEIHSLRL*TRHV-VRTTSSADSLEMHWRYLNRDRWTKNILEQRFRRNWN 340
           C     LRL TR      T S +S    + + ++   T+ ++EQ  R +WN
Sbjct: 590 CEPSPVLRLRTRDSNPSNTDSRESNHKKYNHFHQKSQTRRVMEQYDRNSWN 640


>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1116

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -3

Query: 290 LCSDNASASRASLRTMLFLPRVEFIDEDYGFQSMSKAFVI 171
           L S N     ASL    ++PR+  ++   G  S  K+FV+
Sbjct: 259 LASSNVKTLDASLDQGEWVPRIHRLESQIGLISKKKSFVL 298


>SPAC2F7.15 |rsm24||mitochondrial ribosomal protein subunit
           S24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 258

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = +3

Query: 69  FKVSIDVMSDKAVDAVVRIFIGPRYDCLGRLMSINDKRLGHALKS 203
           FKV+   + ++    V+R+ +GPRY+    L+ I+  +   AL++
Sbjct: 135 FKVTNIPLLEEKQRHVLRLLVGPRYNPEEDLVRISSDKYSSALQN 179


>SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 599

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -1

Query: 409 VHRSVCGKPRGLLYHQLSMVLKPVPVASKPLFQYVFS 299
           +HRSV  +   L Y   ++VL+   VA+   F YV+S
Sbjct: 492 LHRSVLSRLNPLRYCSPNIVLQFAKVANHLNFMYVYS 528


>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
           SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = -3

Query: 278 NASASRASLRTMLFLPRVEFID--EDYGFQSMSKAFVIDAHET 156
           NASAS+  L +++  P  EFI   +  G+    +AF +   +T
Sbjct: 408 NASASKQPLHSLITPPEQEFIQKLDQIGWYISIEAFPLQIKDT 450


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,767,956
Number of Sequences: 5004
Number of extensions: 34698
Number of successful extensions: 102
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)