Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_K22
         (421 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0733 + 5570084-5570282,5570395-5570600,5572484-5572624,557...    29   1.1  
03_06_0604 - 35006004-35008580                                         29   1.1  
06_03_0942 - 26185898-26185932,26186004-26186379,26186473-261866...    28   2.7  
11_06_0213 - 21321676-21322069,21322311-21322507,21322818-213234...    28   3.5  
03_06_0716 - 35695158-35696795,35697075-35697288,35697290-356973...    27   4.6  
06_03_1313 - 29252335-29252446,29253430-29253671,29253770-292538...    27   6.1  

>07_01_0733 + 5570084-5570282,5570395-5570600,5572484-5572624,
            5572773-5572949,5573049-5573145,5573575-5573687,
            5573774-5573896,5574004-5574075,5575340-5575432,
            5575564-5575674,5575767-5575889,5576834-5576890,
            5576939-5577022,5577140-5577214,5577418-5577554,
            5577719-5577853,5579029-5579168,5579334-5579399,
            5579732-5579838,5579910-5579990,5580064-5580138,
            5580224-5580325,5581837-5582005,5582090-5582217,
            5582596-5582679,5582779-5582879,5583729-5583882,
            5583964-5584038,5584112-5584262,5584463-5585078,
            5585427-5585487,5585874-5586019,5586104-5586287,
            5586363-5586440,5586603-5586931,5587023-5587199,
            5587571-5587667,5587742-5587897,5587962-5588198,
            5588271-5588354,5588426-5588486,5588762-5588898
          Length = 1912

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = +1

Query: 286  QRPVD*KHIGTKVSTQLEQVSRPSRVGGIRVPLAFRTRFCALS 414
            Q P+   H G  V  ++  VSR S  G +RV L+ R+  CA S
Sbjct: 1280 QEPISGFHEGQFVKCKVLDVSRSSE-GSVRVDLSLRSSMCANS 1321


>03_06_0604 - 35006004-35008580
          Length = 858

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +3

Query: 294 GGLKTYWNKGFDATGTGFKTIES 362
           GG  TY+NKG++ T T  KT+ S
Sbjct: 186 GGTVTYFNKGYNTTFTANKTLSS 208


>06_03_0942 -
           26185898-26185932,26186004-26186379,26186473-26186614,
           26186694-26186820,26186870-26186927,26187520-26187551,
           26187848-26188454
          Length = 458

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 15/51 (29%), Positives = 21/51 (41%)
 Frame = -2

Query: 417 FRECTEACAESQGDSYTTNSRWS*NLFQLRRNLCSNMFLVHRSLFR*RQCI 265
           F+EC EA      D+   NS    +  +LR  +CS        L R   C+
Sbjct: 400 FKECNEAPTLCTSDTSNANSEADLSADELRTKICSKEMAAKAELLRTIGCV 450


>11_06_0213 -
           21321676-21322069,21322311-21322507,21322818-21323477,
           21323522-21323578,21324741-21324848
          Length = 471

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 312 WNKGFDATGTGFKTIESWW 368
           W++ FD  G G K  E+WW
Sbjct: 375 WDEHFDPNGHGVKQGETWW 393


>03_06_0716 -
           35695158-35696795,35697075-35697288,35697290-35697372,
           35697695-35697865
          Length = 701

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 21/58 (36%), Positives = 28/58 (48%)
 Frame = -3

Query: 290 LCSDNASASRASLRTMLFLPRVEFIDEDYGFQSMSKAFVIDAHETAQAIVSGTNKYTY 117
           L SD    S+ S+  MLF       DE    +SM K  VID H+T +  V+G   + Y
Sbjct: 126 LLSDYVKVSKVSVEDMLF-------DEQDILRSMDKIEVIDFHQTLE--VNGIRFWCY 174


>06_03_1313 - 29252335-29252446,29253430-29253671,29253770-29253848,
            29254991-29255130,29255262-29255571,29255810-29255952,
            29256106-29256306,29256453-29256581,29256921-29257199,
            29258036-29259720,29261255-29261764,29261901-29262108,
            29264347-29264458,29264594-29264763
          Length = 1439

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 295  PVSVQITPVHLERVCGRCCSYHVS 224
            P+   +  VHL+  C  CC++ VS
Sbjct: 1256 PIKDDLIMVHLQYSCSHCCTFMVS 1279


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,875,806
Number of Sequences: 37544
Number of extensions: 239502
Number of successful extensions: 607
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 766563072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)